| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10019981m |
| Family | CBM49 |
| Protein Properties | Length: 621 Molecular Weight: 68388.4 Isoelectric Point: 9.9595 |
| Chromosome | Chromosome/Scaffold: 2 Start: 146496 End: 151198 |
| Description | glycosyl hydrolase 9C2 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM49 | 528 | 605 | 2.7e-37 |
| VAIVQKVTGSWVSKGRTYYRYSTTVINKSARPLKSLNLSIKNLYGPIWGLSRSGNSFGLPSWMHSLPSGKSLEFVYIH | |||
| GH9 | 25 | 486 | 0 |
| DYGQALSKSLLFFEAQRSGVLPRNQRVTWRSHSGLSDGKSSGVNLVGGYYDAGDNVKFGLPMAFTVTMMAWSVIEYGSQLQANGELGNSIDAIKWGTDYF IKAHPEPNVLYGEVGDGNTDHYCWQRPEEMTTDRKAYRIDPSNPGSDLAGETAAAMAAASIVFRRSNPVYARLLLTHAYQLFDFADKYRGKYDSSITVAQ KYYRSVSGYNDELLWAAAWLYQASNNQFYLDYLGRNGDAMGGTGWSMTEFGWDVKYAGVQTLVAKFLMQGKAGRHAPVFRRFKDKADFFMCSLLGKGSRN IQKTPGGLIFRQRWNNMQFVTSASFLTTVYSDYLTSSRSNLRCSSGNVAPSQLLSFAKSQVDYILGDNPRATSYMVGYGNNFPQRVHHRGSSIVSVKVDR TFVTCRGGYATWFSRKGSDPNLLTGAIVGGPDAYDNFADRRDNYEQTEPATYNNAPLLGVLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 621 Download |
| MAKPASVAAL LLLLLCFPVA FSGHDYGQAL SKSLLFFEAQ RSGVLPRNQR VTWRSHSGLS 60 DGKSSGVNLV GGYYDAGDNV KFGLPMAFTV TMMAWSVIEY GSQLQANGEL GNSIDAIKWG 120 TDYFIKAHPE PNVLYGEVGD GNTDHYCWQR PEEMTTDRKA YRIDPSNPGS DLAGETAAAM 180 AAASIVFRRS NPVYARLLLT HAYQLFDFAD KYRGKYDSSI TVAQKYYRSV SGYNDELLWA 240 AAWLYQASNN QFYLDYLGRN GDAMGGTGWS MTEFGWDVKY AGVQTLVAKF LMQGKAGRHA 300 PVFRRFKDKA DFFMCSLLGK GSRNIQKTPG GLIFRQRWNN MQFVTSASFL TTVYSDYLTS 360 SRSNLRCSSG NVAPSQLLSF AKSQVDYILG DNPRATSYMV GYGNNFPQRV HHRGSSIVSV 420 KVDRTFVTCR GGYATWFSRK GSDPNLLTGA IVGGPDAYDN FADRRDNYEQ TEPATYNNAP 480 LLGVLARLSS GHSGYSQFLP AVPAPVVRRP MPIRKPRVTT PVRASGPVAI VQKVTGSWVS 540 KGRTYYRYST TVINKSARPL KSLNLSIKNL YGPIWGLSRS GNSFGLPSWM HSLPSGKSLE 600 FVYIHSTTPA NVAVSSYTLA * 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02171 | PLN02171 | 0 | 16 | 620 | 609 | + endoglucanase | ||
| PLN02340 | PLN02340 | 0 | 19 | 617 | 604 | + endoglucanase | ||
| PLN02420 | PLN02420 | 0 | 23 | 488 | 468 | + endoglucanase | ||
| PLN00119 | PLN00119 | 0 | 25 | 489 | 465 | + endoglucanase | ||
| pfam00759 | Glyco_hydro_9 | 0 | 25 | 486 | 464 | + Glycosyl hydrolase family 9. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005576 | extracellular region |
| GO:0005975 | carbohydrate metabolic process |
| GO:0030246 | carbohydrate binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAN31840.1 | 0 | 1 | 620 | 1 | 620 | putative endo-beta-1,4-glucanase [Arabidopsis thaliana] |
| EMBL | CAC94006.1 | 0 | 23 | 620 | 25 | 620 | endo-beta-1,4-glucanase [Fragaria x ananassa] |
| RefSeq | NP_176621.1 | 0 | 1 | 620 | 1 | 620 | AtGH9C2 (Arabidopsis thaliana glycosyl hydrolase 9C2); carbohydrate binding / catalytic/ hydrolase, hydrolyzing O-glycosyl compounds |
| RefSeq | XP_002299478.1 | 0 | 9 | 620 | 11 | 622 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002303645.1 | 0 | 22 | 619 | 24 | 621 | glycosyl hydrolase family 9 [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ksd_A | 0 | 24 | 488 | 3 | 428 | A Chain A, Structure Of N-Terminal Domain Irsp53BAIAP2 |
| PDB | 1ksc_A | 0 | 24 | 488 | 3 | 428 | A Chain A, Structure Of N-Terminal Domain Irsp53BAIAP2 |
| PDB | 1ks8_A | 0 | 24 | 488 | 3 | 428 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 2xfg_A | 0 | 18 | 488 | 18 | 459 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
| PDB | 4tf4_B | 0 | 25 | 564 | 5 | 495 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
