Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10020088m |
Family | GH28 |
Protein Properties | Length: 551 Molecular Weight: 60453.3 Isoelectric Point: 7.6755 |
Chromosome | Chromosome/Scaffold: 2 Start: 1967507 End: 1970198 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 158 | 504 | 0 |
SACKVEASTMIVPAEYIFLVGPISFSGPYCQANIVFQLDGMIVAPTDTDSWGRGLMWWIEFTKLKGITIQGKGVIDGRGTVWWQQDYLSDYPIDDDFKLI VPLNNSVQEHPPMPIRSELNGRMPSIKPTALRFYGSIDVTVTGITIQNSPQCHLKFDNCVQVLVHDVSVSSPGDSPNTDGIHLQNTKDVMIHTSTLACGD DCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDSTKACVSNITVRDVVMHNTMTGVRIKTWQGGIGSVKGILFSNIQLTEVQLPIVIDQFYCDHSKCMNH TSAVSVEGVTYEKIRGTYTVKPVHFACSDSYPCIDVQLSGIELKPVQ |
Full Sequence |
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Protein Sequence Length: 551 Download |
KRENIIIQQP RTTMITRKGL MLRSITMTIL VSILVWSVTL ETCIARRGRH LRRHHHHSSS 60 SSLSDSLSTK KPKSHESNSH SHKSKPKPKP KPKMKSPPPK PDVGSPVVSQ PPQVQQPPPS 120 PLPLQPVEDS QAFNVLDFGA KGDGMSDDTQ AFEAAWASAC KVEASTMIVP AEYIFLVGPI 180 SFSGPYCQAN IVFQLDGMIV APTDTDSWGR GLMWWIEFTK LKGITIQGKG VIDGRGTVWW 240 QQDYLSDYPI DDDFKLIVPL NNSVQEHPPM PIRSELNGRM PSIKPTALRF YGSIDVTVTG 300 ITIQNSPQCH LKFDNCVQVL VHDVSVSSPG DSPNTDGIHL QNTKDVMIHT STLACGDDCI 360 SIQTGCSNVY VHNVNCGPGH GISIGSLGKD STKACVSNIT VRDVVMHNTM TGVRIKTWQG 420 GIGSVKGILF SNIQLTEVQL PIVIDQFYCD HSKCMNHTSA VSVEGVTYEK IRGTYTVKPV 480 HFACSDSYPC IDVQLSGIEL KPVQLQYHMS DPFCWKTFGE LISTTVPPID CLQIGKPARN 540 GVHSDHDICL * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-75 | 133 | 501 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-78 | 164 | 500 | 338 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03010 | PLN03010 | 1.0e-79 | 131 | 500 | 375 | + polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-88 | 134 | 501 | 372 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-104 | 133 | 528 | 403 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF17670.1 | 0 | 14 | 549 | 1 | 542 | AC009398_19 F20B24.8 [Arabidopsis thaliana] |
GenBank | AAL31197.1 | 0 | 81 | 550 | 2 | 474 | At1g60590/F8A5_12 [Arabidopsis thaliana] |
GenBank | ABK95830.1 | 0 | 14 | 549 | 1 | 516 | unknown [Populus trichocarpa] |
RefSeq | NP_563875.6 | 0 | 14 | 549 | 1 | 532 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_564758.2 | 0 | 14 | 550 | 1 | 540 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-21 | 206 | 448 | 93 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-19 | 224 | 500 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-19 | 224 | 500 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-19 | 224 | 500 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-19 | 224 | 500 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |