CAZyme Information

Basic Information
SpeciesCapsella rubella
Cazyme IDCarubv10020116m
FamilyGH20
Protein PropertiesLength: 537 Molecular Weight: 60040.6 Isoelectric Point: 8.0951
ChromosomeChromosome/Scaffold: 2 Start: 7324371 End: 7329966
Descriptionbeta-hexosaminidase 3
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH201784870
  TDQPRFSYRGLLIDTSRHYLPLPVIKKVIDSMTYAKLNVLHWHIVDTQSFPLEIPSYPKLWNGAYSSSQRYTIDDAAEIVNYAGRRGIHVLAEIDVPGHA
  LSWGKGYPSLWPSKNCQEPLDVSSDFTFKVIDGILSDFSKIFKFKFVHLGGDEVNTTCWSATPRIAQWLQKHRMREDEAYQYFVLRAQKIAMSHGYEIIN
  WEETFNNFGSELNPKTVVHNWLGTGVVERVTASGLRCIVSNQDKWYLDHIDAPWQGFYSNEPLQDIKDKKQQSLVLGGEVCMWGEHIDASDIEQTIWPRA
  AAAAERLWTP
Full Sequence
Protein Sequence     Length: 537     Download
MRGRGAKIAG VLPLFTLLIA GAISAFDDIE RLRIWPLPAE VKHGGRRMYL SDDFKLVTEG    60
SKYGDKSGIL KEGFDRMLSV VRLSHVVSGH RNSSGSGGSG LLQGVHVVIS SSSTDELEYG    120
ADESYKLVVP SPEKPSYAHL EAKSVYGALH GLQTFSQLCH FNLKKKIIEI LMTPWNITDQ    180
PRFSYRGLLI DTSRHYLPLP VIKKVIDSMT YAKLNVLHWH IVDTQSFPLE IPSYPKLWNG    240
AYSSSQRYTI DDAAEIVNYA GRRGIHVLAE IDVPGHALSW GKGYPSLWPS KNCQEPLDVS    300
SDFTFKVIDG ILSDFSKIFK FKFVHLGGDE VNTTCWSATP RIAQWLQKHR MREDEAYQYF    360
VLRAQKIAMS HGYEIINWEE TFNNFGSELN PKTVVHNWLG TGVVERVTAS GLRCIVSNQD    420
KWYLDHIDAP WQGFYSNEPL QDIKDKKQQS LVLGGEVCMW GEHIDASDIE QTIWPRAAAA    480
AERLWTPYAK LAKNPDKVTT RLAHFRCLLN QRGVAAAPLV GGGRVVPLEP GSCLAQ*       540
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd02742GH20_hexosaminidase1.0e-63185485322+
cd06563GH20_chitobiase-like1.0e-73183502362+
cd06570GH20_chitobiase-like_13.0e-78183487316+
pfam00728Glyco_hydro_201.0e-110183487335+
cd06562GH20_HexA_HexB-like1.0e-160183513350+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004563beta-N-acetylhexosaminidase activity
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankAAB60911.101525361397ESTs gb
GenBankEEC79230.102753622527hypothetical protein OsI_19972 [Oryza sativa Indica Group]
RefSeqNP_001055557.102753626531Os05g0415700 [Oryza sativa (japonica cultivar-group)]
RefSeqNP_176737.2015361535HEXO3 (BETA-HEXOSAMINIDASE 3); beta-N-acetylhexosaminidase/ hexosaminidase [Arabidopsis thaliana]
RefSeqXP_002514769.103253627527beta-hexosaminidase, putative [Ricinus communis]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB2gk1_H0345227500B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
PDB2gk1_F0345227500B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
PDB2gk1_D0345227500B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
PDB2gk1_B0345227500B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
PDB1o7a_F03452215508A Chain A, Human Beta-Hexosaminidase B
Transmembrane Domains
StartEnd
726
Signal Peptide
Cleavage Site
25
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
EX1190882981974940
EX1264022771093850
DW1191583081854920
CK2104943192125300
HO8039823981425370
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_022_00071.4Aquca_022_00071.3Aquca_022_00071.2Aquca_022_00071.1Aquca_010_00682.1
Aquca_004_00645.1
Arabidopsis lyrata475658485946470561
Arabidopsis thalianaAT1G65590.1AT3G55260.1AT1G05590.1
Brachypodium distachyonBradi2g57420.1Bradi2g25310.1Bradi2g37460.1Bradi3g44607.1Bradi1g69660.1
Bradi1g23740.1
Brassica rapaBra004121Bra014765Bra032460
Carica papayaevm.model.supercontig_197.26
Capsella rubellaCarubv10016974mCarubv10011603m
Chlamydomonas reinhardtiig11709.t1
Citrus clementinaCiclev10014808mCiclev10031174mCiclev10031139mCiclev10031669mCiclev10033772m
Ciclev10019509mCiclev10024601m
Citrus sinensisorange1.1g008945morange1.1g013337morange1.1g008821morange1.1g014971morange1.1g044344m
orange1.1g007722morange1.1g007610m
Cucumis sativusCucsa.165600.1Cucsa.178740.1Cucsa.165600.2.144.314Cucsa.165600.2.144.314Cucsa.177460.1
Cucsa.165600.2.312.421Cucsa.165600.2.312.421
Eucalyptus grandisEucgr.G02896.1Eucgr.L01476.1Eucgr.K02799.2Eucgr.K02799.1Eucgr.K02799.3
Eucgr.K02798.2Eucgr.K02798.1
Fragaria vescamrna26730.1-v1.0-hybridmrna02330.1-v1.0-hybrid
Glycine maxGlyma18g52290.1Glyma02g10570.1Glyma10g43710.1Glyma20g38400.1Glyma08g17200.1
Glyma08g16970.1Glyma15g41986.1
Gossypium raimondiiGorai.002G136400.2Gorai.002G136400.1Gorai.011G246500.1Gorai.012G068200.1Gorai.012G068200.2
Gorai.002G136400.3Gorai.012G068200.3Gorai.007G264000.1
Linum usitatissimumLus10003292Lus10030323Lus10022251Lus10030348Lus10007899
Malus domesticaMDP0000798095MDP0000262060.270.444MDP0000262060.270.444MDP0000564236MDP0000262060.174.257
MDP0000262060.174.257
Manihot esculentacassava4.1_033827mcassava4.1_033064mcassava4.1_004406mcassava4.1_007813mcassava4.1_023099m
cassava4.1_021615m
Medicago truncatulaMedtr2g062560.1
Mimulus guttatusmgv1a004365mmgv1a003720mmgv1a007861mmgv1a003512mmgv1a023788m
Oryza sativaLOC_Os01g66700.1LOC_Os05g34320.2LOC_Os05g34320.1LOC_Os05g02510.1LOC_Os05g34320.3
LOC_Os07g38790.1LOC_Os03g11980.1
Panicum virgatumPavirv00023753mPavirv00005093mPavirv00062644mPavirv00067910mPavirv00063863m
Pavirv00062646mPavirv00001875mPavirv00056279mPavirv00062645m.258.396Pavirv00062645m.258.396
Pavirv00060770mPavirv00016511mPavirv00054866mPavirv00049460mPavirv00062645m.174.254
Pavirv00062645m.174.254
Physcomitrella patensPp1s70_132V6.1Pp1s3_199V6.1
Phaseolus vulgarisPhvul.008G015400.1Phvul.007G010100.1Phvul.005G045300.1Phvul.005G043200.1
Picea abiesMA_177334g0010MA_271570g0010MA_92690g0010.179.289MA_92690g0010.179.289MA_92690g0010.297.429
MA_92690g0010.297.429
Populus trichocarpaPotri.008G079400.2Potri.008G079400.1Potri.010G211000.2Potri.010G211000.1Potri.010G211000.4
Potri.010G211000.3Potri.008G079400.5Potri.008G079400.3Potri.008G079400.4Potri.001G232800.1
Potri.001G232600.1
Prunus persicappa003880mppa002753m
Ricinus communis29929.m00450328180.m00037729616.m00021628180.m00037634575.m000024
47890.m000013
Setaria italicaSi001028mSi021738mSi024695mSi021693mSi029311m
Si034794m
Selaginella moellendorffii117332429308422139422155445016
422160429325441789422260
Sorghum bicolorSb09g020420.2Sb09g020420.1Sb09g001670.1Sb02g037280.1Sb01g042640.1
Thellungiella halophilaThhalv10018379mThhalv10010264mThhalv10007181mThhalv10007179m
Vitis viniferaGSVIVT01016639001GSVIVT01006264001GSVIVT01004010001GSVIVT01006000001
Volvox carteriVocar20013124m
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny  (This image is cropped. Click for full image.)