y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10020232m |
Family | GH28 |
Protein Properties | Length: 470 Molecular Weight: 50872 Isoelectric Point: 5.2389 |
Chromosome | Chromosome/Scaffold: 2 Start: 10021153 End: 10023560 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 92 | 421 | 0 |
MACSAPNSVLLVPQGRRYLVNATKFDGPCQERLIIQIDGTIVAPDEPSQWDPKFQRVWLQFSKLQGVVFQGNGVIDGSGTKWWAASCKKNKSNPCVGAPT ALTIYSSSNVYVRGLTIRNSQQMHLIIARSTTVRISRVMVTSPGDSPNTDGIHITSSTDVVVQDSKISTGDDCVSIVNGSARIKMKRIYCGPGHGISIGS LGQGHSTGIVSAVVLDTAYLKNTTNGLRIKTWQGGNGYVKGVRFENVQMQDVANPIIIDQFYCDSPSTCQNQTSAVHISEIMYRNITGTTKSAKAIKFAC SDAVPCSHIVLNNVNLEGNDKNVEAYCNSA |
Full Sequence |
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Protein Sequence Length: 470 Download |
MDKPFIVSLF ALLMVASYGA QGNSSYRELD ILGKLENLDV PDDEIDDNAT FFDFSLFTSQ 60 YSGKNLVNVD SFSAAGDGVS DDTQAFTSAW TMACSAPNSV LLVPQGRRYL VNATKFDGPC 120 QERLIIQIDG TIVAPDEPSQ WDPKFQRVWL QFSKLQGVVF QGNGVIDGSG TKWWAASCKK 180 NKSNPCVGAP TALTIYSSSN VYVRGLTIRN SQQMHLIIAR STTVRISRVM VTSPGDSPNT 240 DGIHITSSTD VVVQDSKIST GDDCVSIVNG SARIKMKRIY CGPGHGISIG SLGQGHSTGI 300 VSAVVLDTAY LKNTTNGLRI KTWQGGNGYV KGVRFENVQM QDVANPIIID QFYCDSPSTC 360 QNQTSAVHIS EIMYRNITGT TKSAKAIKFA CSDAVPCSHI VLNNVNLEGN DKNVEAYCNS 420 AEGFGYGVVH PSADCLYSHD DKSLDQTQHE YLAKTVMVGE ETENAHDEL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-87 | 61 | 408 | 351 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 2.0e-89 | 51 | 436 | 395 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-98 | 94 | 421 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-117 | 67 | 431 | 368 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-143 | 62 | 433 | 374 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC98004.1 | 0 | 1 | 469 | 1 | 457 | Similar to gb |
RefSeq | NP_173760.2 | 0 | 1 | 469 | 2 | 460 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_177207.1 | 0 | 1 | 469 | 1 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002328587.1 | 0 | 1 | 439 | 1 | 436 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525360.1 | 0 | 1 | 469 | 1 | 505 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-24 | 162 | 382 | 115 | 338 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 1e-20 | 166 | 415 | 80 | 327 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-20 | 166 | 415 | 80 | 327 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-20 | 166 | 415 | 80 | 327 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-20 | 166 | 415 | 80 | 327 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |