y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10020387m |
Family | PL1 |
Protein Properties | Length: 410 Molecular Weight: 44990.1 Isoelectric Point: 8.6495 |
Chromosome | Chromosome/Scaffold: 2 Start: 8750026 End: 8751943 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 129 | 328 | 0 |
WIIFARDMVIKLKEELIMNSFKTIDGRGVNVHIAGGACITVQYVTNVIIHGINIHDCKRKGNAYVRDSPSHYGWRTASDGDAVSIFGGSHVWVDHCSLSN CADGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDSYTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWQMYAIGGSAAPTINSQGNRFLA |
Full Sequence |
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Protein Sequence Length: 410 Download |
MRMTLVHLSL SLFSCLLLVL SPTFVASTTP VSDPDLVVQE VNEKINASRR NLGVLSCGTG 60 NPIDDCWRCD PKWEKNRQRL ADCAIGFGKH AIGGRDGKIY VVTDSSDKDA VNPKPGTLRY 120 AVIQDEPLWI IFARDMVIKL KEELIMNSFK TIDGRGVNVH IAGGACITVQ YVTNVIIHGI 180 NIHDCKRKGN AYVRDSPSHY GWRTASDGDA VSIFGGSHVW VDHCSLSNCA DGLIDAIHGS 240 TAITISNNYM THHNKVMLLG HSDSYTRDKN MQVTIAFNHF GEGLVQRMPR CRHGYFHVVN 300 NDYTHWQMYA IGGSAAPTIN SQGNRFLAPN DHVFKEVTKY EDAPQSKWKK WNWRSEGDLF 360 LNGAFFTASG GRASSSYAKA SSLSARPSSL VASVTGSAGA LFCKKGSRC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-25 | 148 | 326 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-71 | 141 | 326 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 9.0e-81 | 135 | 330 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAG28907.1 | 0 | 36 | 409 | 19 | 392 | AC008113_23 F12A21.12 [Arabidopsis thaliana] |
GenBank | AAM67091.1 | 0 | 3 | 409 | 1 | 406 | putative pectate lyase [Arabidopsis thaliana] |
DDBJ | BAB59066.1 | 0 | 27 | 409 | 27 | 409 | pectate lyase [Salix gilgiana] |
RefSeq | NP_564906.1 | 0 | 1 | 409 | 1 | 408 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002285340.1 | 0 | 27 | 409 | 21 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 61 | 401 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 61 | 401 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 6e-18 | 80 | 328 | 2 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 6e-16 | 151 | 303 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 3krg_A | 7e-16 | 151 | 303 | 130 | 295 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |