Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10020662m |
Family | GH19 |
Protein Properties | Length: 321 Molecular Weight: 35824.2 Isoelectric Point: 4.6163 |
Chromosome | Chromosome/Scaffold: 2 Start: 7491896 End: 7494338 |
Description | basic chitinase |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH19 | 73 | 304 | 0 |
DTISKAQFEDMLLHRNNYLCPAKGFYTYDAFITAAKSFPDFGTTGDTAARKKEVAAFFGQTSHETTGRAPDGPYSWGYCYKEQLDPPSTYCDQRQSYTWP CAYNASYYGRGPMQLLWNYNYGQCGRDIGVDLLSNPNIVANDAVIAFKTAIWFWMTPQYPKPSCHAVITDQWQPSYADRAAGRLPGYGLLTNIINGGYEC GIDQDPNVKDRINYYETYCNMFGVDPGENLDC |
Full Sequence |
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Protein Sequence Length: 321 Download |
MSKMKPYIFS FIIFSLFLSL SFAAECGKQA GGAICLNGLC CSKYGYCGDN ELYCELPECQ 60 SNCWPDVSGN LSDTISKAQF EDMLLHRNNY LCPAKGFYTY DAFITAAKSF PDFGTTGDTA 120 ARKKEVAAFF GQTSHETTGR APDGPYSWGY CYKEQLDPPS TYCDQRQSYT WPCAYNASYY 180 GRGPMQLLWN YNYGQCGRDI GVDLLSNPNI VANDAVIAFK TAIWFWMTPQ YPKPSCHAVI 240 TDQWQPSYAD RAAGRLPGYG LLTNIINGGY ECGIDQDPNV KDRINYYETY CNMFGVDPGE 300 NLDCYKQQPF GYNVLLDAAS * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00187 | Chitin_bind_1 | 2.0e-9 | 26 | 63 | 38 | + Chitin recognition protein. | ||
cd06921 | ChtBD1_GH19_hevein | 2.0e-9 | 25 | 63 | 39 | + Hevein or Type 1 chitin binding domain subfamily co-occuring with family 19 glycosyl hydrolases or with barwin domains. This subfamily includes Hevein, a major IgE-binding allergen in natural rubber latex. ChtBD1 is a lectin domain found in proteins from plants and fungi that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins, and the alpha subunit of Kluyveromyces lactis killer toxin. This domain is involved in the recognition and/or binding of chitin subunits; it typically occurs N-terminal to glycosyl hydrolase domains in chitinases, together with other carbohydrate-binding domains, or by itself in tandem-repeat arrangements. | ||
cd00442 | lysozyme_like | 2.0e-10 | 127 | 266 | 140 | + lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides. | ||
pfam00182 | Glyco_hydro_19 | 6.0e-131 | 75 | 304 | 233 | + Chitinase class I. | ||
cd00325 | chitinase_glyco_hydro_19 | 3.0e-131 | 75 | 304 | 233 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. |
Gene Ontology | |
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GO Term | Description |
GO:0004568 | chitinase activity |
GO:0006032 | chitin catabolic process |
GO:0008061 | chitin binding |
GO:0016998 | cell wall macromolecule catabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF69775.1 | 0 | 23 | 319 | 2 | 305 | AF135135_1 class I chitinase [Boechera stricta] |
GenBank | AAF69778.1 | 0 | 23 | 310 | 16 | 309 | AF135138_1 class I chitinase [Turritis glabra] |
GenBank | AAF69787.1 | 0 | 28 | 319 | 1 | 295 | AF135147_1 class I chitinase [Boechera lignifera] |
GenBank | AAF69792.1 | 0 | 15 | 319 | 1 | 312 | AF135152_1 class I chitinase [Boechera parishii] |
Swiss-Prot | Q09023 | 0 | 23 | 319 | 20 | 321 | CHI2_BRANA RecName: Full=Endochitinase CH25; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2z38_A | 0 | 69 | 310 | 3 | 246 | A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
PDB | 3cql_B | 0 | 71 | 311 | 2 | 243 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
PDB | 3cql_A | 0 | 71 | 311 | 2 | 243 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
PDB | 2z39_B | 0 | 69 | 310 | 2 | 245 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module Glu234ala Mutant (bjchi3-e234a) |
PDB | 2z39_A | 0 | 69 | 310 | 2 | 245 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module Glu234ala Mutant (bjchi3-e234a) |