Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10020684m |
Family | CBM43 |
Protein Properties | Length: 314 Molecular Weight: 32323.9 Isoelectric Point: 4.3915 |
Chromosome | Chromosome/Scaffold: 2 Start: 13580879 End: 13582734 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 227 | 308 | 2.1e-32 |
WCVAKPSVPDPIIQEAMNFACGSGADCHSIQPNGPCFKPNTLWAHASFAFNSYWQRTKGTGGSCTFGGTGMLVTIDPSFNGC |
Full Sequence |
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Protein Sequence Length: 314 Download |
MIKAVKHTSL LEKMMTHLNL AQPLDYSSSS ITQPYGVSTT LTLPPYVSLP PLSVPGNAPP 60 FCVNPPNTPP SSSSPPTTLP NPPDSSSNPN SIPNPPESSS NPNPPESSSN PNPPDSSSNP 120 NPPVTVPNPP ESSSNPDPPV TVPNPPESSI PNPPESGYTP GPPGSVSGPP YSEPSPSTPT 180 DTPTPSGGIP TPTGSIPSPS SGFLPPIVYP PPMAPPSPSV NPTSAYWCVA KPSVPDPIIQ 240 EAMNFACGSG ADCHSIQPNG PCFKPNTLWA HASFAFNSYW QRTKGTGGSC TFGGTGMLVT 300 IDPSFNGCHF DFF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 2.0e-17 | 227 | 282 | 61 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-30 | 227 | 310 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD30228.1 | 0 | 1 | 304 | 1 | 344 | AC007202_10 T8K14.10 [Arabidopsis thaliana] |
RefSeq | NP_001117621.1 | 0 | 1 | 313 | 44 | 396 | unknown protein [Arabidopsis thaliana] |
RefSeq | NP_178066.2 | 0 | 1 | 313 | 45 | 397 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002312230.1 | 0 | 29 | 304 | 3 | 292 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516415.1 | 0 | 32 | 312 | 6 | 262 | conserved hypothetical protein [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 8e-18 | 227 | 310 | 13 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EG434934 | 92 | 223 | 314 | 0 |
EG434912 | 92 | 223 | 314 | 1.4013e-45 |
EG434931 | 92 | 223 | 314 | 1.4013e-45 |
EG434910 | 92 | 223 | 314 | 1.4013e-45 |
EG434946 | 92 | 223 | 314 | 1.4013e-45 |
Sequence Alignments (This image is cropped. Click for full image.) |
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