Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10021377m |
Family | CBM43 |
Protein Properties | Length: 113 Molecular Weight: 12199.8 Isoelectric Point: 5.4419 |
Chromosome | Chromosome/Scaffold: 2 Start: 8134292 End: 8134630 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 26 | 110 | 2.2e-30 |
WCVADPSASDAQLQTNLDYLCGILPEAYCVIIGPGGPCYEPNTVANHASVMMNEYYKLNGATEKACDFNHSGRIVDTNPSYGGCS |
Full Sequence |
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Protein Sequence Length: 113 Download |
MFQRLTVIFI LSFLASHSLH VSARTWCVAD PSASDAQLQT NLDYLCGILP EAYCVIIGPG 60 GPCYEPNTVA NHASVMMNEY YKLNGATEKA CDFNHSGRIV DTNPSYGGCS FT* 120 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 5.0e-17 | 25 | 97 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-35 | 25 | 111 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001031243.1 | 2e-34 | 1 | 112 | 1 | 111 | unknown protein [Arabidopsis thaliana] |
RefSeq | NP_001078361.1 | 3e-23 | 5 | 111 | 8 | 114 | unknown protein [Arabidopsis thaliana] |
RefSeq | NP_001117561.1 | 5e-33 | 1 | 112 | 1 | 110 | unknown protein [Arabidopsis thaliana] |
RefSeq | NP_176859.1 | 1e-34 | 1 | 112 | 1 | 111 | glycosyl hydrolase family protein 17 [Arabidopsis thaliana] |
RefSeq | NP_974558.1 | 4.99983e-42 | 1 | 112 | 1 | 111 | Expressed protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 8e-21 | 22 | 111 | 9 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |