CAZyme Information

Basic Information
SpeciesCapsella rubella
Cazyme IDCarubv10021524m
FamilyGT4
Protein PropertiesLength: 485 Molecular Weight: 54475.1 Isoelectric Point: 7.2971
ChromosomeChromosome/Scaffold: 2 Start: 11080238 End: 11081692
DescriptionUDP-Glycosyltransferase superfamily protein
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GT43004384.3e-25
  MGVSGRLVRDKGHPLLYEAFASIVKTHPQVYLLVAGSGPWGKRYAELGENVRVLGALEPEELSGFYNALDVFVNPTLRPQGLDLTIIEAMQCGKPVVAPN
  YPSIVGTVVVDERFGYTFSPNVRSLIDTLDSVVRDGSSV
Full Sequence
Protein Sequence     Length: 485     Download
MAFKNHSSRT SLSSSTSFSF KFTTIITLAL IICSSYYIFF SQFDYSPVTF SPVSPPFAGD    60
LRDLTFPWNK LSLGPVSEKL KLAVFCKSWP VGSIPGGMER HAYTLYNSLA SRGHEIHVFT    120
VSSDRSNREE YHNRGDLHVY FAPNGHGTLN HSQAFEIFDR INGVDHPFDY VHTESVSLPH    180
WRVKMVPNGD IAVTWHGIWY EIMHSSLFQE LSNDRPSADL QQTMPRLVDE IRFFPKYKQH    240
ICISNSAREV LVNIYQLPKR NVHVIVNGVD QTKFVYSPES GAKFRVKHGV PDGNGTVIVM    300
GVSGRLVRDK GHPLLYEAFA SIVKTHPQVY LLVAGSGPWG KRYAELGENV RVLGALEPEE    360
LSGFYNALDV FVNPTLRPQG LDLTIIEAMQ CGKPVVAPNY PSIVGTVVVD ERFGYTFSPN    420
VRSLIDTLDS VVRDGSSVLE MKGLACKEYA LSMFTSTQMA SAYERFFMCM KDERYCQYPL    480
PTDN* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
COG0438RfaG3.0e-3281467402+
cd03811GT1_WabH_like1.0e-3396415327+
cd03807GT1_WbnK_like7.0e-3695467393+
cd03798GT1_wlbH_like4.0e-4496467402+
cd03801GT1_YqgM_like9.0e-6681467396+
Gene Ontology
GO TermDescription
GO:0009058biosynthetic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankAAD55663.1014741476AC008017_36 Hypothetical protein [Arabidopsis thaliana]
RefSeqNP_177459.1014841486glycosyl transferase family 1 protein [Arabidopsis thaliana]
RefSeqXP_002317369.1014831483predicted protein [Populus trichocarpa]
RefSeqXP_002326600.1014781487predicted protein [Populus trichocarpa]
RefSeqXP_002524261.1014831484glycosyltransferase, putative [Ricinus communis]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3oka_B0.00000000005267397170308A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form)
PDB3oka_A0.00000000005267397170308A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form)
PDB3okp_A0.00000000005267397170308A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form)
PDB3okc_A0.00000000005267397170308A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' Bound To Gdp (Orthorhombic Crystal Form)
PDB2gek_A0.000000079439933314A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' Bound To Gdp (Orthorhombic Crystal Form)
Transmembrane Domains
StartEnd
1739
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
AM7324152861664430
FG1633432452344780
GR1862222651754320
CO9850292272534790
DK5196382272534790
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_055_00071.1Aquca_004_00554.1
Arabidopsis lyrata316266919149492915
Arabidopsis thalianaAT1G73160.1AT5G59070.1AT4G19460.1
Brachypodium distachyonBradi2g45370.1
Brassica rapaBra012542Bra003857Bra013399Bra020331
Carica papayaevm.model.supercontig_305.3
Capsella rubellaCarubv10004612m
Citrus clementinaCiclev10008126mCiclev10003490m
Citrus sinensisorange1.1g039338morange1.1g044542m
Cucumis sativusCucsa.268510.1
Eucalyptus grandisEucgr.E01172.1Eucgr.F03250.1
Fragaria vescamrna27708.1-v1.0-hybridmrna27178.1-v1.0-hybrid
Glycine maxGlyma09g34990.1Glyma01g35440.1Glyma16g17250.1Glyma16g08210.1
Gossypium raimondiiGorai.009G372800.1Gorai.008G217900.1
Linum usitatissimumLus10032187Lus10014499Lus10033297Lus10034760
Malus domesticaMDP0000252217MDP0000510770MDP0000280727MDP0000690085
Manihot esculentacassava4.1_023608mcassava4.1_022788m
Medicago truncatulaMedtr5g026360.1Medtr8g071900.1
Mimulus guttatusmgv1a005617mmgv1a027119m
Oryza sativaLOC_Os01g46430.1
Panicum virgatumPavirv00039421mPavirv00050283m
Physcomitrella patensPp1s115_97V6.1Pp1s115_97V6.2Pp1s231_59V6.1
Phaseolus vulgarisPhvul.002G124600.1Phvul.003G277200.1
Picea abiesMA_159118g0690MA_58772g0010
Populus trichocarpaPotri.011G097000.1Potri.003G105500.1Potri.001G128300.1
Prunus persicappa004871mppa024212m
Ricinus communis30150.m00047029827.m002616
Setaria italicaSi001150m
Selaginella moellendorffii79637
Sorghum bicolorSb03g029770.1
Thellungiella halophilaThhalv10013459mThhalv10027268mThhalv10019571m
Vitis viniferaGSVIVT01036920001GSVIVT01036921001GSVIVT01036924001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny