Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10021607m |
Family | CE8 |
Protein Properties | Length: 362 Molecular Weight: 39884.3 Isoelectric Point: 7.8154 |
Chromosome | Chromosome/Scaffold: 2 Start: 3048029 End: 3050958 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 43 | 330 | 0 |
IVVDKYGYGNFKTIQSAIDSVPFGRNYWTKIYVRQGLYHEKVTIPRYKTKIQLEGYRSSQTIVQYNDAGSSVNSATLTVLAEFFVATNITFKEKPLTPYG EIRVAPAVLLAADKAAFYGCVFVSMQDTLGDLVGRHFFRLCYIKGAIDFIWGGGQSLYQSCTIEVKGVTTASNDEADGGLIAGYITAQGRASEQDTSGFV FRGCKILGSGKAFLGRAYGSHSRVLFVHTNMADVIVPQGWDIWTDPKQVSTTTFGEVNCYGPGANKKRRVAWEKKLSYQDVAYFVNRT |
Full Sequence |
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Protein Sequence Length: 362 Download |
MESLVCVFAL SIFYVTLVSS HTVSNVSEGI RLEDTNNDIV PTIVVDKYGY GNFKTIQSAI 60 DSVPFGRNYW TKIYVRQGLY HEKVTIPRYK TKIQLEGYRS SQTIVQYNDA GSSVNSATLT 120 VLAEFFVATN ITFKEKPLTP YGEIRVAPAV LLAADKAAFY GCVFVSMQDT LGDLVGRHFF 180 RLCYIKGAID FIWGGGQSLY QSCTIEVKGV TTASNDEADG GLIAGYITAQ GRASEQDTSG 240 FVFRGCKILG SGKAFLGRAY GSHSRVLFVH TNMADVIVPQ GWDIWTDPKQ VSTTTFGEVN 300 CYGPGANKKR RVAWEKKLSY QDVAYFVNRT TFINKEGWIE SLPPHILTLS PSSSPDDNSF 360 V* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 1.0e-74 | 42 | 344 | 309 | + pectinesterase family protein | ||
PLN02176 | PLN02176 | 2.0e-80 | 8 | 343 | 339 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-81 | 37 | 339 | 318 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 4.0e-82 | 43 | 339 | 297 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 2.0e-93 | 42 | 343 | 312 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40838.1 | 0 | 9 | 343 | 15 | 341 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002263748.1 | 0 | 42 | 343 | 31 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277604.1 | 0 | 37 | 336 | 40 | 347 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002512520.1 | 0 | 39 | 328 | 29 | 316 | Pectinesterase-2 precursor, putative [Ricinus communis] |
RefSeq | XP_002529267.1 | 0 | 38 | 343 | 35 | 337 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 5e-33 | 41 | 341 | 7 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 6e-26 | 39 | 314 | 1 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 7e-16 | 53 | 311 | 18 | 318 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 7e-16 | 53 | 311 | 18 | 318 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 8e-16 | 53 | 311 | 18 | 318 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |