y
Basic Information | |
---|---|
Species | Capsella rubella |
Cazyme ID | Carubv10021808m |
Family | GT47 |
Protein Properties | Length: 655 Molecular Weight: 75491 Isoelectric Point: 8.1172 |
Chromosome | Chromosome/Scaffold: 2 Start: 577817 End: 579781 |
Description | root hair specific 8 |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GT47 | 267 | 593 | 0 |
SCEGKGVYVYDLPSKFNKDLLGECSDMVPWANFCSYFKNDAFGELIENLGKGWFRTHQYSLEPIFHSRVLKHPCRVYDESQAKLFYVPFYGGIDVLRWHF KNVSEDVKDVLAIEVVKWLASKESWRKNAGKDHVFVLGKISWDFRRNNKFSWGSSLLEMQEMKNPTKLLIERHPWEANDIAIPHPTYFHPKTDDDIATWQ NKIIGKSRKSLISFAGGARPGKPDSIRSILIDQCTSSPNQCRFLNCTDGGCDKPESVIELFRDSEFCLQPPGDSPTRKSIFDSLISGCIPVIFDPYSAYY QYTWHLPEDHRRYSVYINKEDVKKVKR |
Full Sequence |
---|
Protein Sequence Length: 655 Download |
LLQKITLKLE CRKQPNKKMP VSVSKRRPRP SKKTETEKAE KTLKDPRTCC SNICSIFSRS 60 VLYRVPLTIL FLFFIYLWST STTVISGNVV HICISSRKLN DLYCLTAGSQ PALRVPVNNF 120 TKPVSEDVVR SNEEKNVLVL DQDGDKDFAK YETFTGERYL DKSMVGTSLN VLKNDTFTGE 180 RVSVLDQDSK SIHEENLGSV LDQDYSPKSE IDQELLVDWD PETGEERYRY FKSKDEDEET 240 ALKAVEKYLQ IQRSWLSTGS NREKPGSCEG KGVYVYDLPS KFNKDLLGEC SDMVPWANFC 300 SYFKNDAFGE LIENLGKGWF RTHQYSLEPI FHSRVLKHPC RVYDESQAKL FYVPFYGGID 360 VLRWHFKNVS EDVKDVLAIE VVKWLASKES WRKNAGKDHV FVLGKISWDF RRNNKFSWGS 420 SLLEMQEMKN PTKLLIERHP WEANDIAIPH PTYFHPKTDD DIATWQNKII GKSRKSLISF 480 AGGARPGKPD SIRSILIDQC TSSPNQCRFL NCTDGGCDKP ESVIELFRDS EFCLQPPGDS 540 PTRKSIFDSL ISGCIPVIFD PYSAYYQYTW HLPEDHRRYS VYINKEDVKK VKRVNVIEKL 600 MSKTLRERED MRSYIVHELL PGLVYGDSNA KFERFRDAFD ITMDSLLRKI AKTV* 660 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 3.0e-68 | 267 | 592 | 341 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_176534.2 | 0 | 2 | 654 | 7 | 664 | catalytic [Arabidopsis thaliana] |
RefSeq | NP_198941.1 | 0 | 23 | 654 | 2 | 560 | exostosin family protein [Arabidopsis thaliana] |
RefSeq | XP_002269913.1 | 0 | 220 | 652 | 116 | 536 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299537.1 | 0 | 19 | 652 | 1 | 571 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509789.1 | 0 | 88 | 652 | 58 | 565 | Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis] |