| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10021845m |
| Family | GH28 |
| Protein Properties | Length: 407 Molecular Weight: 43897.4 Isoelectric Point: 10.0069 |
| Chromosome | Chromosome/Scaffold: 2 Start: 13178710 End: 13180125 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 60 | 393 | 0 |
| KDACQWKGNSRVYVPFGTFYLGGVSFTGPCKSRISFIIKGTLLAPKDANAIKQDTWIIFRYVDYLTVSGGGILDGQGSYSWPLNNCRLTLNCRPLPMNMG FQFVRFSKINHIKSINSKMAHLNFFAVQYFDITSVTIKAPGDSPNTDGIKIGSSSHMKIHNVNIGTGDDCIAILSGTTDLDIFKVNCGPGHGISVGSLGR FKGEKSVQGLTVRDSIFNGTTNGVRIKTWASSGTPNLVSHFLYKNLQMINVGNPINIDQQYCPNSHCNLKSSASQVQIQDVKYNNIWGTSKDKVAVKFQC SKNAPCKGVELLNVNLVHRGPDGPATALCENVGG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 407 Download |
| MASTISGFML ILFIAAVASN SISVAASTAL AGRKIFDVRN YGARGDGKTD NAIAFTKAWK 60 DACQWKGNSR VYVPFGTFYL GGVSFTGPCK SRISFIIKGT LLAPKDANAI KQDTWIIFRY 120 VDYLTVSGGG ILDGQGSYSW PLNNCRLTLN CRPLPMNMGF QFVRFSKINH IKSINSKMAH 180 LNFFAVQYFD ITSVTIKAPG DSPNTDGIKI GSSSHMKIHN VNIGTGDDCI AILSGTTDLD 240 IFKVNCGPGH GISVGSLGRF KGEKSVQGLT VRDSIFNGTT NGVRIKTWAS SGTPNLVSHF 300 LYKNLQMINV GNPINIDQQY CPNSHCNLKS SASQVQIQDV KYNNIWGTSK DKVAVKFQCS 360 KNAPCKGVEL LNVNLVHRGP DGPATALCEN VGGRARGKIS PQSCIR* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 3.0e-86 | 35 | 405 | 373 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-86 | 38 | 402 | 372 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-88 | 33 | 404 | 379 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-92 | 63 | 391 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 4.0e-118 | 31 | 404 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF71796.1 | 0 | 1 | 406 | 1 | 412 | AC013430_5 F3F9.9 [Arabidopsis thaliana] |
| RefSeq | NP_173158.1 | 0 | 22 | 405 | 19 | 401 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_175003.1 | 0 | 1 | 405 | 4 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_177961.2 | 0 | 1 | 406 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_180874.1 | 0 | 11 | 404 | 5 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 1e-16 | 124 | 391 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-16 | 124 | 391 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-16 | 124 | 391 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-16 | 124 | 391 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 1e-16 | 124 | 391 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
