Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10021951m |
Family | CE8 |
Protein Properties | Length: 348 Molecular Weight: 38447.8 Isoelectric Point: 8.6791 |
Chromosome | Chromosome/Scaffold: 2 Start: 3551114 End: 3553720 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 30 | 317 | 0 |
VVSHNGKGHFKTIQAAVDSVPSGNTNWIKIYLRHGTYNEKVVIPKEKEKIIMHGNNAAKVVIQYNDAGVSNSSGPFIVNAQYFVAIKITFKNTNTKMTPK IPYPAIKVAPAVILTADKAWFYGCSFISVQDTVADSSGRHYFKNCYIEGAIDFIWGRGQSIYQNCVIYVKGVIPKAKVNEEGVLDGCITAQGRESEEDTS GFVFNNCVIEGDGKAYLGRAWRAYSRVIFYGTQMSNVVVPQGWDPMNHQGQEDKFTYAEVNCTGEGADMKGRVGWEKKLSAKDVKSLI |
Full Sequence |
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Protein Sequence Length: 348 Download |
MKGYSSSSLL ISSYGLNPKD FYKDVTKILV VSHNGKGHFK TIQAAVDSVP SGNTNWIKIY 60 LRHGTYNEKV VIPKEKEKII MHGNNAAKVV IQYNDAGVSN SSGPFIVNAQ YFVAIKITFK 120 NTNTKMTPKI PYPAIKVAPA VILTADKAWF YGCSFISVQD TVADSSGRHY FKNCYIEGAI 180 DFIWGRGQSI YQNCVIYVKG VIPKAKVNEE GVLDGCITAQ GRESEEDTSG FVFNNCVIEG 240 DGKAYLGRAW RAYSRVIFYG TQMSNVVVPQ GWDPMNHQGQ EDKFTYAEVN CTGEGADMKG 300 RVGWEKKLSA KDVKSLIDFK TFIDEDGWMA TLPSSIVSLY SPSSINF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 3.0e-74 | 26 | 329 | 305 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 3.0e-75 | 25 | 329 | 317 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 9.0e-77 | 27 | 329 | 307 | + Probable pectinesterase | ||
PLN02176 | PLN02176 | 1.0e-80 | 25 | 330 | 308 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 6.0e-92 | 29 | 329 | 306 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40838.1 | 0 | 29 | 333 | 45 | 341 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002263748.1 | 0 | 29 | 333 | 32 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318946.1 | 0 | 23 | 333 | 33 | 338 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512520.1 | 0 | 9 | 318 | 12 | 316 | Pectinesterase-2 precursor, putative [Ricinus communis] |
RefSeq | XP_002515255.1 | 0 | 25 | 333 | 38 | 335 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2e-35 | 29 | 336 | 9 | 317 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 7e-24 | 30 | 304 | 6 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 2e-17 | 32 | 276 | 12 | 283 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 2e-17 | 32 | 276 | 12 | 283 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 2e-17 | 32 | 276 | 12 | 283 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV984237 | 295 | 39 | 329 | 0 |
GR458872 | 291 | 35 | 324 | 0 |
EX315894 | 281 | 53 | 329 | 0 |
EX317112 | 280 | 54 | 329 | 0 |
EX093174 | 252 | 22 | 267 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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