Basic Information | |
---|---|
Species | Capsella rubella |
Cazyme ID | Carubv10022105m |
Family | GH28 |
Protein Properties | Length: 337 Molecular Weight: 36144.2 Isoelectric Point: 7.4587 |
Chromosome | Chromosome/Scaffold: 2 Start: 13956361 End: 13958030 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 3 | 324 | 0 |
SVNVPAGKVFLLNSLHFTGPCIPKPLLFTMDGEMIAQSDPNKWGKSENGVIPWLIFDQVDGLAIVGRGLLNGQGKAWWDIHCRDHPGPMMTFSNCGNVTL KSLRFRNSAQTHVLVMGSHNVYIDDIKITAPEASPNTDGIHITSSTAVSITHSDIATGDDCVSIGDQVNNVNVSFLNCGPGHGVSIGSLGRGGTEVAVEN IRVWHVNFTGTTNGARIKTWPGGTGYARGIEFFDIRFSSVQNPIIIDQFYGCAPKCPQTRKAVHIEKVRYMKMRGTSATKVAMKLECSGESVPCSDIFMR DIDLSPANGIDSVSSLCSFVQG |
Full Sequence |
---|
Protein Sequence Length: 337 Download |
MASVNVPAGK VFLLNSLHFT GPCIPKPLLF TMDGEMIAQS DPNKWGKSEN GVIPWLIFDQ 60 VDGLAIVGRG LLNGQGKAWW DIHCRDHPGP MMTFSNCGNV TLKSLRFRNS AQTHVLVMGS 120 HNVYIDDIKI TAPEASPNTD GIHITSSTAV SITHSDIATG DDCVSIGDQV NNVNVSFLNC 180 GPGHGVSIGS LGRGGTEVAV ENIRVWHVNF TGTTNGARIK TWPGGTGYAR GIEFFDIRFS 240 SVQNPIIIDQ FYGCAPKCPQ TRKAVHIEKV RYMKMRGTSA TKVAMKLECS GESVPCSDIF 300 MRDIDLSPAN GIDSVSSLCS FVQGSAQGII RPSSCL* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-72 | 6 | 306 | 310 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-78 | 4 | 307 | 309 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 4.0e-79 | 6 | 310 | 308 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-80 | 6 | 326 | 322 | + polygalacturonase | ||
PLN02793 | PLN02793 | 4.0e-82 | 2 | 336 | 345 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD55472.1 | 0 | 1 | 336 | 31 | 381 | AC009322_12 Similar to polygalacturonases [Arabidopsis thaliana] |
EMBL | CBI15273.1 | 0 | 5 | 333 | 63 | 384 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36307.1 | 0 | 6 | 336 | 69 | 402 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_178131.1 | 0 | 1 | 336 | 1 | 336 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002267182.1 | 0 | 5 | 333 | 63 | 390 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-19 | 66 | 252 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000000002 | 1 | 307 | 23 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000002 | 1 | 307 | 23 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000002 | 1 | 307 | 23 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000002 | 1 | 307 | 23 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
DT769246 | 253 | 92 | 333 | 0 |
DR050772 | 298 | 27 | 306 | 0 |
DT746124 | 248 | 97 | 333 | 0 |
DT768232 | 243 | 102 | 333 | 0 |
JZ191937 | 308 | 35 | 336 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|