| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10022113m |
| Family | PL4 |
| Protein Properties | Length: 659 Molecular Weight: 75108.7 Isoelectric Point: 9.4872 |
| Chromosome | Chromosome/Scaffold: 2 Start: 6859028 End: 6861004 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 39 | 641 | 0 |
| TREVIVDNGIIKVRFSSPQGLITGIQYKGVDNVLSPHQRTRGYWDIAWQGENNRGGGIDHVEGTKFKIITQNQDQVEISFSRTWDSGSHSRSRSHRIPLN VDKRYIIRANSSGVYAYAIFERLPEWPGFDMGQVRIVFKLDQDKFHYMAVADNIQREMPMDSDRDIHRGHAKALGYKEAVQLTHPHNSMFKNQVDDKYQY SCEIKDNKVHGWISNKSNVGFWIISPSGEYRSGGPVKQELTSHVGPTATASFISGHYLGTDMDMHYKSGEAWKKVLGPVFIYLNSGDDLLWEDAKRQAKE EVKAWPYEFVASSDFPSRRERGTVTGRLLVNDDELLTPGKFAYVGLAPPGEAGSWQTNTKGYQFWTKTNETGYFKIPNVRPGTYNLYGWVPGFIGDFTYQ NHVNVASGSEVKLGRVMYKPPRNGPTLWEIGVPDRTAREYFIPEPYKNTINPLYLNHTDKFRQYGLWQRYTELYPNHDLVYTIGASNYSQDWFYAQVTRN NGDSTYNPTTWQIVFHLPYVNMRGSYTLQLALASAARAHLQVRVNNEYSTRPLFSTGYIGRDNAIARHGIHGIYRLYCINVPGRSLRTGTNTIYLRQAKG SGP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 659 Download |
| MKKKITCSII CFLLLLLLPI DGTSAKAPTV QETRNKHGTR EVIVDNGIIK VRFSSPQGLI 60 TGIQYKGVDN VLSPHQRTRG YWDIAWQGEN NRGGGIDHVE GTKFKIITQN QDQVEISFSR 120 TWDSGSHSRS RSHRIPLNVD KRYIIRANSS GVYAYAIFER LPEWPGFDMG QVRIVFKLDQ 180 DKFHYMAVAD NIQREMPMDS DRDIHRGHAK ALGYKEAVQL THPHNSMFKN QVDDKYQYSC 240 EIKDNKVHGW ISNKSNVGFW IISPSGEYRS GGPVKQELTS HVGPTATASF ISGHYLGTDM 300 DMHYKSGEAW KKVLGPVFIY LNSGDDLLWE DAKRQAKEEV KAWPYEFVAS SDFPSRRERG 360 TVTGRLLVND DELLTPGKFA YVGLAPPGEA GSWQTNTKGY QFWTKTNETG YFKIPNVRPG 420 TYNLYGWVPG FIGDFTYQNH VNVASGSEVK LGRVMYKPPR NGPTLWEIGV PDRTAREYFI 480 PEPYKNTINP LYLNHTDKFR QYGLWQRYTE LYPNHDLVYT IGASNYSQDW FYAQVTRNNG 540 DSTYNPTTWQ IVFHLPYVNM RGSYTLQLAL ASAARAHLQV RVNNEYSTRP LFSTGYIGRD 600 NAIARHGIHG IYRLYCINVP GRSLRTGTNT IYLRQAKGSG PFEGVMYDYI RLEEPSRV* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13620 | CarboxypepD_reg | 0.002 | 404 | 451 | 48 | + Carboxypeptidase regulatory-like domain. | ||
| cd10316 | RGL4_M | 8.0e-33 | 358 | 452 | 95 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 3.0e-51 | 466 | 653 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 1.0e-69 | 40 | 326 | 292 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 3.0e-83 | 34 | 232 | 201 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAS99719.1 | 0 | 22 | 657 | 44 | 676 | At2g22620 [Arabidopsis thaliana] |
| DDBJ | BAD94618.1 | 0 | 155 | 658 | 2 | 510 | LG127/30 like gene [Arabidopsis thaliana] |
| EMBL | CAB37543.1 | 0 | 20 | 658 | 31 | 649 | LG127/30 like gene [Arabidopsis thaliana] |
| RefSeq | NP_179847.1 | 0 | 22 | 657 | 44 | 676 | lyase [Arabidopsis thaliana] |
| RefSeq | NP_195516.2 | 0 | 20 | 658 | 31 | 667 | lyase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3njx_A | 0.000007 | 401 | 639 | 283 | 489 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
| PDB | 3njv_A | 0.000008 | 401 | 639 | 283 | 489 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
| PDB | 2xhn_B | 0.000008 | 401 | 639 | 283 | 489 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
| PDB | 2xhn_A | 0.000008 | 401 | 639 | 283 | 489 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
| PDB | 1nkg_A | 0.000008 | 401 | 639 | 283 | 489 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
