| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10022352m |
| Family | AA5 |
| Protein Properties | Length: 764 Molecular Weight: 83583.7 Isoelectric Point: 6.3578 |
| Chromosome | Chromosome/Scaffold: 2 Start: 8479561 End: 8481968 |
| Description | glyoxal oxidase-related protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA5 | 12 | 762 | 0 |
| IIVLVAAVSNAGVTELDLVNPTDDDGSSDGMIKREAIEVDPSKSQKNDQGNDDGSLDGMIKREAIEVDPSKSQRSGEGNDDGMIRREAIEVDPSKSQRSG EGNDDGSSDGMIKREAIEVDPSKSQRSGEGNDDGSSDVMIKREAIEVDPSKSQRRGEGNDDGLSDGMIKREAIEVDPSKSQRSGEGNDDGSSDVMIKREA IEVDPSKSKRSDQGKGKGKHRARQAAAGPEMNWPGKWELFMKNSGVSAMHAILMPVINKVQFYDATIWRISQVKLPPGVPCHVYDQKANKVDCWAHSVLV DINTANIRPLLLTTDTWCSSGGLTVNGTLVSTGGFEGGANTARYLSTCENCAWVEYPQALAARRWYSTQATLPDGTFVVVGGRDALNYEYILPEGQNNKK LYDSLLLRQTDDPEENNLYPFVWLNTDGNLFIFANNRSILLSPKTNKVLKEFPQLPGGARNYPGSSSSALLPIRLYVQNPAVIPADVLICGGARQDAYFR AEKKKLYDPALKDCARISINSAKPVWKTEFMPMSRVMSDTVILPNGEVLIVNGAKRGSSGWHLAKEPNFSPIIYTPTKPLGKRFKELAPSTIPRMYHSIA IALPDGKVLIGGSNTNDGYQYNVEYPTELRVEKFSPPYLDPALANMRPRIITAPKQIKYGKPFDVRIELKQQNVAKENVMLTMLAPAFTTHSVSMNMRLL MLGIMNVKNVGGDNHQIQAVAPPSGNVAPPGYYIFSAVYNGVPSVGEWIQI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 764 Download |
| MKESTRLLIL SIIVLVAAVS NAGVTELDLV NPTDDDGSSD GMIKREAIEV DPSKSQKNDQ 60 GNDDGSLDGM IKREAIEVDP SKSQRSGEGN DDGMIRREAI EVDPSKSQRS GEGNDDGSSD 120 GMIKREAIEV DPSKSQRSGE GNDDGSSDVM IKREAIEVDP SKSQRRGEGN DDGLSDGMIK 180 REAIEVDPSK SQRSGEGNDD GSSDVMIKRE AIEVDPSKSK RSDQGKGKGK HRARQAAAGP 240 EMNWPGKWEL FMKNSGVSAM HAILMPVINK VQFYDATIWR ISQVKLPPGV PCHVYDQKAN 300 KVDCWAHSVL VDINTANIRP LLLTTDTWCS SGGLTVNGTL VSTGGFEGGA NTARYLSTCE 360 NCAWVEYPQA LAARRWYSTQ ATLPDGTFVV VGGRDALNYE YILPEGQNNK KLYDSLLLRQ 420 TDDPEENNLY PFVWLNTDGN LFIFANNRSI LLSPKTNKVL KEFPQLPGGA RNYPGSSSSA 480 LLPIRLYVQN PAVIPADVLI CGGARQDAYF RAEKKKLYDP ALKDCARISI NSAKPVWKTE 540 FMPMSRVMSD TVILPNGEVL IVNGAKRGSS GWHLAKEPNF SPIIYTPTKP LGKRFKELAP 600 STIPRMYHSI AIALPDGKVL IGGSNTNDGY QYNVEYPTEL RVEKFSPPYL DPALANMRPR 660 IITAPKQIKY GKPFDVRIEL KQQNVAKENV MLTMLAPAFT THSVSMNMRL LMLGIMNVKN 720 VGGDNHQIQA VAPPSGNVAP PGYYIFSAVY NGVPSVGEWI QIV* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam09118 | DUF1929 | 3.0e-27 | 658 | 762 | 106 | + Domain of unknown function (DUF1929). Members of this family adopt a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase. | ||
| cd02851 | E_set_GO_C | 1.0e-29 | 658 | 762 | 106 | + C-terminal Early set domain associated with the catalytic domain of galactose oxidase. E or "early" set domains are associated with the catalytic domain of galactose oxidase at the C-terminal end. Galactose oxidase is an extracellular monomeric enzyme which catalyzes the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalyzing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminal domain of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. | ||
| pfam07250 | Glyoxal_oxid_N | 6.0e-118 | 260 | 503 | 248 | + Glyoxal oxidase N-terminus. This family represents the N-terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyzes the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL84955.1 | 0 | 210 | 763 | 43 | 594 | AT5g19580/T20D1_100 [Arabidopsis thaliana] |
| RefSeq | NP_176897.1 | 0.0007 | 1 | 78 | 1 | 68 | glyoxal oxidase-related [Arabidopsis thaliana] |
| RefSeq | NP_176897.1 | 0 | 180 | 763 | 45 | 615 | glyoxal oxidase-related [Arabidopsis thaliana] |
| RefSeq | NP_197459.1 | 0 | 210 | 763 | 43 | 594 | glyoxal oxidase-related [Arabidopsis thaliana] |
| RefSeq | XP_002514260.1 | 0 | 241 | 762 | 91 | 612 | Galactose oxidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2eib_A | 3e-18 | 326 | 763 | 225 | 638 | A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant |
| PDB | 2eid_A | 3e-18 | 326 | 763 | 225 | 638 | A Chain A, Galactose Oxidase W290g Mutant |
| PDB | 2eic_A | 4e-18 | 326 | 763 | 225 | 638 | A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f |
| PDB | 2vz3_A | 5e-18 | 326 | 763 | 225 | 638 | A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f |
| PDB | 2vz1_A | 5e-18 | 326 | 763 | 225 | 638 | A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f |
