Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10022383m |
Family | GH28 |
Protein Properties | Length: 405 Molecular Weight: 43972.4 Isoelectric Point: 9.0067 |
Chromosome | Chromosome/Scaffold: 2 Start: 3294865 End: 3296517 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 57 | 392 | 0 |
ACARRSGRSKIYVPKGTFYLGGVEFVGPCKNPIEFVIDGTLLASANPSDIKQDTWINFRYINDLSISGFGTLDGQGKKSWPLNDCNKNSNCPKLAMTMGF AFVNNSNIKDITSLNSKMGHFNFFSVHHFNITGVTITAPGDSPNTDGIKMGSCSNIRISNTNIGTGDDCIAILSGTTNLDISNVKCGPGHGISVGSLGKN KDEKDVKDLTVRDIVFNGTSDGIRIKTWESSASKILVSNFVYENIQMIDVEKPINIDQKYCPHPPCEHAQKGESHVQIQDLKLKNIYGTSKNKVAVNLQC SKSFPCKNVKLIDINLKHNGLKGGPSIAMCENVDGS |
Full Sequence |
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Protein Sequence Length: 405 Download |
MVCIAYAFKT LCLCLFFIVV ASRPTVKTKV FNVQRHGSKP DGKTDNANAF TSVWSRACAR 60 RSGRSKIYVP KGTFYLGGVE FVGPCKNPIE FVIDGTLLAS ANPSDIKQDT WINFRYINDL 120 SISGFGTLDG QGKKSWPLND CNKNSNCPKL AMTMGFAFVN NSNIKDITSL NSKMGHFNFF 180 SVHHFNITGV TITAPGDSPN TDGIKMGSCS NIRISNTNIG TGDDCIAILS GTTNLDISNV 240 KCGPGHGISV GSLGKNKDEK DVKDLTVRDI VFNGTSDGIR IKTWESSASK ILVSNFVYEN 300 IQMIDVEKPI NIDQKYCPHP PCEHAQKGES HVQIQDLKLK NIYGTSKNKV AVNLQCSKSF 360 PCKNVKLIDI NLKHNGLKGG PSIAMCENVD GSASGKMVPK HCLN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 6.0e-79 | 1 | 404 | 411 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-80 | 32 | 400 | 375 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 1.0e-81 | 1 | 404 | 410 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 6.0e-94 | 58 | 394 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 5.0e-121 | 7 | 402 | 408 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_175003.1 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179147.1 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179148.1 | 0 | 1 | 400 | 1 | 400 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179149.2 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_181560.1 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-21 | 109 | 367 | 100 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 2e-17 | 127 | 389 | 79 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-17 | 127 | 389 | 79 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-17 | 127 | 389 | 79 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-17 | 127 | 389 | 79 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |