Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10022386m |
Family | GH28 |
Protein Properties | Length: 435 Molecular Weight: 47537 Isoelectric Point: 6.6429 |
Chromosome | Chromosome/Scaffold: 2 Start: 3273941 End: 3275618 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 77 | 412 | 0 |
STGSKSALLLVPDTFCFLVKPTSFNGPCRTQLVLQIDGFIVSPDGPKSWPLNYQRQWMMFYRVNGLSIQGSGFINGRGQKWWNLPCKPHKGPNGTTQTGP CDSPVAFRIFQSSKVRIKGLNFMNSAQFHVRFDNCSDVVVDSVTIKAPASSPNTDGIHIENTHNVQIHNSVISNGDDCISIGAGCFNVDIKNVTCGPSHG ISIGSLGVHNSEAYVSNITVTNSTLWNSDNGVRIKTWQGGSGSVSRIVFSNILMVNVRNPIMIDQYYCQTKNCANQTSAVIISDVLYENIKGTYDLRSPP IHFGCSDSVPCTNLRLMDVDLFPSKGQLFENPFCWN |
Full Sequence |
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Protein Sequence Length: 435 Download |
MALPNSLFYA FFLILFSSIR MAHNMYISPS PAPNPAYDDN DNIAPTVFDV TSFGAIGDCA 60 TDDTSAFKMA WDAACMSTGS KSALLLVPDT FCFLVKPTSF NGPCRTQLVL QIDGFIVSPD 120 GPKSWPLNYQ RQWMMFYRVN GLSIQGSGFI NGRGQKWWNL PCKPHKGPNG TTQTGPCDSP 180 VAFRIFQSSK VRIKGLNFMN SAQFHVRFDN CSDVVVDSVT IKAPASSPNT DGIHIENTHN 240 VQIHNSVISN GDDCISIGAG CFNVDIKNVT CGPSHGISIG SLGVHNSEAY VSNITVTNST 300 LWNSDNGVRI KTWQGGSGSV SRIVFSNILM VNVRNPIMID QYYCQTKNCA NQTSAVIISD 360 VLYENIKGTY DLRSPPIHFG CSDSVPCTNL RLMDVDLFPS KGQLFENPFC WNAYGSMQIT 420 IPPVHCLLEP LPDC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 6.0e-83 | 13 | 425 | 420 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 3.0e-83 | 48 | 427 | 387 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 6.0e-92 | 77 | 397 | 321 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 9.0e-100 | 44 | 397 | 357 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 9.0e-128 | 47 | 427 | 383 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_176064.1 | 0 | 1 | 433 | 1 | 433 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002276945.1 | 0 | 6 | 429 | 12 | 450 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318932.1 | 0 | 26 | 432 | 56 | 461 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330008.1 | 0 | 47 | 432 | 21 | 406 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512560.1 | 0 | 47 | 432 | 74 | 459 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 1e-24 | 49 | 416 | 22 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1czf_B | 2e-23 | 149 | 401 | 106 | 348 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 2e-23 | 149 | 401 | 106 | 348 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 2iq7_G | 4e-23 | 153 | 401 | 83 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-23 | 153 | 401 | 83 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |