y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10022424m |
Family | GH28 |
Protein Properties | Length: 401 Molecular Weight: 43288.4 Isoelectric Point: 6.4971 |
Chromosome | Chromosome/Scaffold: 2 Start: 7307534 End: 7309942 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 55 | 389 | 0 |
DAACEVADSVVIYVPKGRYLVSGEVRFEGESCKSREITLRIDGTLIGPQDYRLLGKRENWFSFIGVHNVTVLGGSFDAKGSTLWSCKANGYDCPEGATTL RFMDSYNVKIKGVLSLNSQLFHIAINRCSNIKIEDVRIIAPDDSPNTDGIHIQLSTDIEVRNASIKTGDDCISIGPGTKNLMVDGITCGPGHGISIGSLA KSIDEPGVENVTVKKAVFVRTDNGLRIKSWPRHSNGFVERVRFLEALMVNVSYPILIDQNYCPGDSYCPSQDSGIKINDVIYNGIMGTSATKIAIKMDCS ERVPCTGIRMQAINLTYSGGDDEAAKTSCINVSGK |
Full Sequence |
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Protein Sequence Length: 401 Download |
MGFSLSFVQV FSIITTISMF HFGQFDARTS LNVLSFGAKP NGVVDSVKAF TDAWDAACEV 60 ADSVVIYVPK GRYLVSGEVR FEGESCKSRE ITLRIDGTLI GPQDYRLLGK RENWFSFIGV 120 HNVTVLGGSF DAKGSTLWSC KANGYDCPEG ATTLRFMDSY NVKIKGVLSL NSQLFHIAIN 180 RCSNIKIEDV RIIAPDDSPN TDGIHIQLST DIEVRNASIK TGDDCISIGP GTKNLMVDGI 240 TCGPGHGISI GSLAKSIDEP GVENVTVKKA VFVRTDNGLR IKSWPRHSNG FVERVRFLEA 300 LMVNVSYPIL IDQNYCPGDS YCPSQDSGIK INDVIYNGIM GTSATKIAIK MDCSERVPCT 360 GIRMQAINLT YSGGDDEAAK TSCINVSGKQ LGLVSPSGCL * 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 9.0e-79 | 58 | 386 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 7.0e-84 | 14 | 396 | 389 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-86 | 31 | 400 | 377 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 5.0e-94 | 29 | 399 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 4.0e-132 | 11 | 400 | 390 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK28449.1 | 0 | 21 | 400 | 21 | 397 | unknown [Arabidopsis thaliana] |
RefSeq | NP_176735.1 | 0 | 21 | 400 | 21 | 397 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002262690.1 | 0 | 32 | 400 | 33 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 5 | 400 | 6 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 4 | 400 | 3 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 1e-19 | 90 | 345 | 35 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-19 | 90 | 345 | 35 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-19 | 90 | 345 | 35 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-19 | 90 | 345 | 35 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 1e-19 | 90 | 345 | 35 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY281549 | 318 | 30 | 346 | 0 |
DY287541 | 300 | 30 | 328 | 0 |
JZ191937 | 302 | 99 | 400 | 0 |
FC899369 | 297 | 30 | 325 | 0 |
DY268186 | 314 | 30 | 342 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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