| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10022775m |
| Family | PL4 |
| Protein Properties | Length: 677 Molecular Weight: 77690.5 Isoelectric Point: 7.8411 |
| Chromosome | Chromosome/Scaffold: 4 Start: 680869 End: 685936 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 56 | 657 | 0 |
| VSHDKVVIDNGIIQVTFSNPQGLITGIRYHGIDNVLDDEIEDRGYWDVTWYEPHKKLEIDKLEGSKFEIITQNEEQVEISFTRTWTISKRGSLVPLNVDK RYIIRSGVSGIYMYGILERLEGWPDVDMDQIRIVFKLNPKKFEFMALSDDRQRSMPSMADRDNAKQLGYKEAVLLTNPKNPMFKGEVDDKYMYSMEDKDN NVHGWISSDPPVGFWMITPSDEFRLGGPIKQDLTSHAGPITLSMFTSTHYAGKEMRMDYRNGEPWKKVFGPVLAYLNSVSPKDSTLRLWKDAKRQMAAEV KSWPYDFVTSEDYPLRHQRGTIEGQFLIKDRYVSRLRIYGKFAFVGLAPIGEAGSWQTESKGYQFWTKADRKGRFIIENVREGNYSLYAWGFGFIGDYKY EQNITITPGSVMDVGPIVYEPPRNGPTIWEIGVPDRTAGEFYIPDPYPTLMNKLYVNPLQDRFRQYGLWERYADLYPQNDLVYTVGVSDYTRDWFFAHVT RNVGNDTYQPTTWQIIFNLKNVNQVGLYTLRIALAAAADSELQIRINDPKSDHIFMSGYIGKDNAIARHGIHGLYRLYSIDVAGGLLNIGDNTIYLTQTR SL | |||
| Full Sequence |
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| Protein Sequence Length: 677 Download |
| MKIGAPANKP GRVIVQVLLH LLLLQSVHCQ NSRNKLNITN PGQNIPPALT VQLRRVSHDK 60 VVIDNGIIQV TFSNPQGLIT GIRYHGIDNV LDDEIEDRGY WDVTWYEPHK KLEIDKLEGS 120 KFEIITQNEE QVEISFTRTW TISKRGSLVP LNVDKRYIIR SGVSGIYMYG ILERLEGWPD 180 VDMDQIRIVF KLNPKKFEFM ALSDDRQRSM PSMADRDNAK QLGYKEAVLL TNPKNPMFKG 240 EVDDKYMYSM EDKDNNVHGW ISSDPPVGFW MITPSDEFRL GGPIKQDLTS HAGPITLSMF 300 TSTHYAGKEM RMDYRNGEPW KKVFGPVLAY LNSVSPKDST LRLWKDAKRQ MAAEVKSWPY 360 DFVTSEDYPL RHQRGTIEGQ FLIKDRYVSR LRIYGKFAFV GLAPIGEAGS WQTESKGYQF 420 WTKADRKGRF IIENVREGNY SLYAWGFGFI GDYKYEQNIT ITPGSVMDVG PIVYEPPRNG 480 PTIWEIGVPD RTAGEFYIPD PYPTLMNKLY VNPLQDRFRQ YGLWERYADL YPQNDLVYTV 540 GVSDYTRDWF FAHVTRNVGN DTYQPTTWQI IFNLKNVNQV GLYTLRIALA AAADSELQIR 600 INDPKSDHIF MSGYIGKDNA IARHGIHGLY RLYSIDVAGG LLNIGDNTIY LTQTRSLTPF 660 QGIMYDYIRL ESPLRT* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| cd10316 | RGL4_M | 2.0e-29 | 373 | 472 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
| cd10317 | RGL4_C | 2.0e-52 | 484 | 671 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
| cd10320 | RGL4_N | 3.0e-81 | 61 | 340 | 286 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
| pfam06045 | Rhamnogal_lyase | 6.0e-94 | 39 | 242 | 208 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAS99719.1 | 0 | 1 | 676 | 1 | 677 | At2g22620 [Arabidopsis thaliana] |
| RefSeq | NP_179847.1 | 0 | 1 | 676 | 1 | 677 | lyase [Arabidopsis thaliana] |
| RefSeq | NP_195508.2 | 0 | 1 | 673 | 1 | 675 | lyase [Arabidopsis thaliana] |
| RefSeq | XP_002308510.1 | 0 | 48 | 676 | 44 | 674 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527245.1 | 0 | 61 | 676 | 2 | 621 | lyase, putative [Ricinus communis] |
