| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10022927m |
| Family | AA1 |
| Protein Properties | Length: 559 Molecular Weight: 61407.6 Isoelectric Point: 9.638 |
| Chromosome | Chromosome/Scaffold: 4 Start: 10998863 End: 11002246 |
| Description | Laccase/Diphenol oxidase family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA1 | 25 | 546 | 0 |
| MVRHYKFNVVMKNTTRLCSSKPIVTVNGRYPGPTIYAREDDTLLIKVVNHVKYNVSIHWHGVRQVRTGWADGPAYITQCPIQPGQVYTYNYTLTGQRGTL WWHAHILWLRATVNGAIVILPKRGVPYPFPKPDHEKVIVLGEWWKSDTEDVINEALKSGLAPNVSDAHMINGHPGPVKNCPSQGYKLSVENGKTYLLRLI NAALNEELFFKVAGHIFTVVEVDAVYVKPFKIDTVLIAPGQTTNVLLTASKSAGKFLVTASPFMDAPIAVDNVTATATVHYSGTLSSSPTVLTLPPPQNA TSVANNFTNSLRSLNSKKYPALVPTTIDHHLLFTVGLGLNACPTCKAGNGSRVVASINNVTFIMPKTALLSAHYFNKSGVFTTDFPKNPPHVFNYSGGSV TNMATETGTRLYKLPYNATVQLVLQDTGVISPENHPLHLHGFNFFQVGRGLGNFNSKTDPNNFNLVDPVERNTIGVPSGGWVAIRFRADNPGVWFMHCHL EVHTTWGLKMAFLVENGKGPNQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 559 Download |
| MGSHMVWFLF LVTFMSVFPA PSESMVRHYK FNVVMKNTTR LCSSKPIVTV NGRYPGPTIY 60 AREDDTLLIK VVNHVKYNVS IHWHGVRQVR TGWADGPAYI TQCPIQPGQV YTYNYTLTGQ 120 RGTLWWHAHI LWLRATVNGA IVILPKRGVP YPFPKPDHEK VIVLGEWWKS DTEDVINEAL 180 KSGLAPNVSD AHMINGHPGP VKNCPSQGYK LSVENGKTYL LRLINAALNE ELFFKVAGHI 240 FTVVEVDAVY VKPFKIDTVL IAPGQTTNVL LTASKSAGKF LVTASPFMDA PIAVDNVTAT 300 ATVHYSGTLS SSPTVLTLPP PQNATSVANN FTNSLRSLNS KKYPALVPTT IDHHLLFTVG 360 LGLNACPTCK AGNGSRVVAS INNVTFIMPK TALLSAHYFN KSGVFTTDFP KNPPHVFNYS 420 GGSVTNMATE TGTRLYKLPY NATVQLVLQD TGVISPENHP LHLHGFNFFQ VGRGLGNFNS 480 KTDPNNFNLV DPVERNTIGV PSGGWVAIRF RADNPGVWFM HCHLEVHTTW GLKMAFLVEN 540 GKGPNQSILP PPKDLPKC* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07732 | Cu-oxidase_3 | 5.0e-49 | 32 | 148 | 119 | + Multicopper oxidase. This entry contains many divergent copper oxidase-like domains that are not recognised by the pfam00394 model. | ||
| PLN02191 | PLN02191 | 3.0e-62 | 6 | 548 | 584 | + L-ascorbate oxidase | ||
| PLN02604 | PLN02604 | 1.0e-84 | 4 | 536 | 561 | + oxidoreductase | ||
| TIGR03388 | ascorbase | 2.0e-86 | 26 | 536 | 545 | + L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases. | ||
| TIGR03389 | laccase | 0 | 26 | 558 | 537 | + laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_565881.1 | 0 | 1 | 558 | 1 | 558 | IRX12 (IRREGULAR XYLEM 12); laccase [Arabidopsis thaliana] |
| RefSeq | XP_002322961.1 | 0 | 8 | 558 | 6 | 557 | laccase 1a [Populus trichocarpa] |
| RefSeq | XP_002322962.1 | 0 | 7 | 558 | 5 | 557 | laccase 1b [Populus trichocarpa] |
| RefSeq | XP_002520425.1 | 0 | 7 | 558 | 6 | 556 | laccase, putative [Ricinus communis] |
| RefSeq | XP_002533894.1 | 0 | 8 | 558 | 5 | 556 | laccase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1asq_B | 0 | 24 | 536 | 1 | 521 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights Into The Structural Basis Of A Multifunctional (Iso) Flavonoid Glycosyltransferase |
| PDB | 1asq_A | 0 | 24 | 536 | 1 | 521 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights Into The Structural Basis Of A Multifunctional (Iso) Flavonoid Glycosyltransferase |
| PDB | 1asp_B | 0 | 24 | 536 | 1 | 521 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights Into The Structural Basis Of A Multifunctional (Iso) Flavonoid Glycosyltransferase |
| PDB | 1asp_A | 0 | 24 | 536 | 1 | 521 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights Into The Structural Basis Of A Multifunctional (Iso) Flavonoid Glycosyltransferase |
| PDB | 1aso_B | 0 | 24 | 536 | 1 | 521 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights Into The Structural Basis Of A Multifunctional (Iso) Flavonoid Glycosyltransferase |
