| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10023116m |
| Family | GT4 |
| Protein Properties | Length: 479 Molecular Weight: 54206.4 Isoelectric Point: 8.0968 |
| Chromosome | Chromosome/Scaffold: 4 Start: 11930729 End: 11933019 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GT4 | 281 | 441 | 2.5e-23 |
| SDPPKFISVAQFRPEKAHMLQLEAFSLALEKLDADVPRPKLQFVGSCRNNSDEERLQKLKDRAVELKVDEDVEFYKNAMYSELVELLGNAVAGMHGMIDE HFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQRTGFLAETVEEYAEAIIEIVKMNETE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 479 Download |
| KSIGIVTFLA QRSASMGICF ILYTLLTILF AVSLSLSLSV INARKSRKRA VGFFHPYTND 60 GGGGERVLWC AVKAIQEEIP DLDCVIFTGD HDSSSDSLAR RAVDRFGVHL QSPPKVIHLN 120 KRKWIEERTY PHFTMIGQSL GSVYLAWEAL RKFTPLYFLD TSGYAFTYPL ARIFGCKVVC 180 YTHYPTISLD MISRVRQRNS MYNNDASIAK SNWLSTCKLV YYRAFSWMYG MVGACTHLAM 240 VNSSWTKSHI EVLWRIPERI RRVYPPCDTS GLQAFPLERS SDPPKFISVA QFRPEKAHML 300 QLEAFSLALE KLDADVPRPK LQFVGSCRNN SDEERLQKLK DRAVELKVDE DVEFYKNAMY 360 SELVELLGNA VAGMHGMIDE HFGISVVEYM AAGAIPIAHN SAGPKMDIVL EEDGQRTGFL 420 AETVEEYAEA IIEIVKMNET ERLKMAESAR KRATRFSEQR FCEDFKTAIR PVFTDGVK* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG0438 | RfaG | 3.0e-17 | 218 | 470 | 256 | + Glycosyltransferase [Cell envelope biogenesis, outer membrane] | ||
| pfam00534 | Glycos_transf_1 | 5.0e-18 | 282 | 452 | 172 | + Glycosyl transferases group 1. Mutations in this domain of human PIGA lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates, including glycogen, Fructose-6-phosphate and lipopolysaccharides. Members of this family transfer UDP, ADP, GDP or CMP linked sugars. The eukaryotic glycogen synthases may be distant members of this family. | ||
| cd03805 | GT1_ALG2_like | 2.0e-22 | 169 | 465 | 313 | + This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans. | ||
| PLN02949 | PLN02949 | 0 | 16 | 478 | 463 | + transferase, transferring glycosyl groups | ||
| cd03806 | GT1_ALG11_like | 0 | 49 | 461 | 416 | + This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD25934.1 | 0 | 42 | 478 | 27 | 474 | AF085279_7 hypothetical protein [Arabidopsis thaliana] |
| GenBank | AAY86782.1 | 0 | 16 | 478 | 1 | 463 | glycosyl transferase family 1 protein [Noccaea caerulescens] |
| RefSeq | NP_181548.2 | 0 | 42 | 478 | 27 | 463 | glycosyl transferase family 1 protein [Arabidopsis thaliana] |
| RefSeq | XP_002318120.1 | 0 | 37 | 474 | 25 | 462 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002528312.1 | 0 | 40 | 472 | 27 | 459 | glycosyl transferase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2f9f_A | 0.00007 | 286 | 456 | 26 | 177 | A Chain A, Crystal Structure Of The Putative Mannosyl Transferase (Wbaz-1)from Archaeoglobus Fulgidus, Northeast Structural Genomics Target Gr29a |
| PDB | 2bis_C | 0.0006 | 380 | 468 | 342 | 427 | A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi |
| PDB | 2bis_B | 0.0006 | 380 | 468 | 342 | 427 | A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi |
| PDB | 2bis_A | 0.0006 | 380 | 468 | 342 | 427 | A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi |
| PDB | 3fro_C | 0.0006 | 380 | 468 | 341 | 426 | A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase With Open And Closed Conformations |
