| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10023489m |
| Family | CE8 |
| Protein Properties | Length: 365 Molecular Weight: 40198.1 Isoelectric Point: 6.5773 |
| Chromosome | Chromosome/Scaffold: 4 Start: 10370230 End: 10371964 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 93 | 345 | 0 |
| TVDLHGCGNFSNVQSAIDAVPDLSPSKTLILVNSGSYREKVTVNENKTNIVIQGRGYQNTSIEWNDTAKSAGNTADSFSFVVLAANFTAYDISFKNNAPE PDPGETDAQAVALRIEGDQAAFYGCGFYGAQDTLLDDKGRHFFKDCFIQGSIDFIFGNGRSLYQDCTINSIAKGNTSGVTGSITAQGRESKDEESGFSFV NCKIDGSGQVLLGRAWGAYATVVFSNTYMSGIITPEGWDDWGDQAKQKYKEMV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 365 Download |
| MLTKPVLTTL IALSYIILAL YTIIPLRSSL SSFATTIITN SKFGALTIPS TLFELTHHQH 60 HHQNHYHHHQ PIKCCERWTS RLTNQYKSSL VLTVDLHGCG NFSNVQSAID AVPDLSPSKT 120 LILVNSGSYR EKVTVNENKT NIVIQGRGYQ NTSIEWNDTA KSAGNTADSF SFVVLAANFT 180 AYDISFKNNA PEPDPGETDA QAVALRIEGD QAAFYGCGFY GAQDTLLDDK GRHFFKDCFI 240 QGSIDFIFGN GRSLYQDCTI NSIAKGNTSG VTGSITAQGR ESKDEESGFS FVNCKIDGSG 300 QVLLGRAWGA YATVVFSNTY MSGIITPEGW DDWGDQAKQK YKEMVFSLTY TFQTIQNKYS 360 LNLM* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02432 | PLN02432 | 2.0e-82 | 88 | 340 | 253 | + putative pectinesterase |
| PLN02665 | PLN02665 | 1.0e-82 | 91 | 333 | 244 | + pectinesterase family protein |
| PLN02634 | PLN02634 | 6.0e-93 | 71 | 348 | 293 | + probable pectinesterase |
| PLN02682 | PLN02682 | 4.0e-104 | 84 | 340 | 264 | + pectinesterase family protein |
| PLN02304 | PLN02304 | 3.0e-113 | 91 | 338 | 251 | + probable pectinesterase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO22722.1 | 0 | 71 | 340 | 70 | 339 | putative pectinesterase family protein [Arabidopsis thaliana] |
| EMBL | CBI30191.1 | 0 | 69 | 340 | 80 | 353 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_181209.1 | 0 | 71 | 340 | 70 | 339 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002264941.1 | 0 | 91 | 340 | 14 | 263 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002326223.1 | 0 | 77 | 340 | 3 | 267 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 8e-40 | 92 | 333 | 9 | 252 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2e-35 | 98 | 333 | 11 | 248 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 2e-17 | 102 | 342 | 44 | 315 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 6e-17 | 102 | 331 | 18 | 280 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 6e-17 | 102 | 331 | 18 | 280 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
