Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10024005m |
Family | CBM43 |
Protein Properties | Length: 226 Molecular Weight: 23345.1 Isoelectric Point: 4.5228 |
Chromosome | Chromosome/Scaffold: 4 Start: 7918031 End: 7920382 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 84 | 165 | 1.5e-33 |
WCVARENVATMALQAALDYACGIGGADCSDIQGGGKCYSPSSLRAHASFAFNSYYQKNPIPSSCNFDGTAVTISSDPSVGSC |
Full Sequence |
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Protein Sequence Length: 226 Download |
MGKSFILVAS LLLLLLSFPS SGTKASSEPV EEEKDITTPL ATNPTTTTPT TVVPNSDSDA 60 SAVATTPLTI PSPPHAAAYP GGSWCVAREN VATMALQAAL DYACGIGGAD CSDIQGGGKC 120 YSPSSLRAHA SFAFNSYYQK NPIPSSCNFD GTAVTISSDP SVGSCRFPST STSESILNVS 180 SEDGLGLFGR IPSHPTPKPE ASNSSSSITF SFLFFFAFVF ISFLL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 3.0e-22 | 83 | 154 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-36 | 83 | 167 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001031450.1 | 0 | 1 | 221 | 1 | 219 | unknown protein [Arabidopsis thaliana] |
RefSeq | NP_001118420.1 | 0 | 1 | 161 | 1 | 159 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002283721.1 | 3.00018e-42 | 84 | 189 | 99 | 204 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002441577.1 | 6.00036e-42 | 8 | 181 | 9 | 171 | hypothetical protein SORBIDRAFT_09g029700 [Sorghum bicolor] |
RefSeq | XP_002512573.1 | 5.99994e-41 | 36 | 167 | 170 | 308 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 5e-17 | 82 | 172 | 11 | 101 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |