y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10024590m |
Family | GH28 |
Protein Properties | Length: 405 Molecular Weight: 44396.4 Isoelectric Point: 7.6069 |
Chromosome | Chromosome/Scaffold: 4 Start: 8865466 End: 8866956 |
Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 57 | 392 | 0 |
DACQWSSGRSTVYIPAGIFYVSQVTFTGPCKNFITFIVTGTLLAPKNPDYIKQEEWILFKYVDNLTVTGGGLLDGQGSYSWPLNDCNKNPSCRTLAMNIG FAFVRFSRINGLRSINSKMGHFNFFSVEDFNITGVTITAPGDSPNTDGIKIGKSNHMHIFNVTIGTGDDCIAILDGTSNLEISDVRCGPGHGISVGSLGR YKDEKNVQGLTVRDSIFNGTTDGLRIKTWAKSVSEISVSNFLYENIQMINVGNPIIIDQQYCPHGQCDSPGKYASHVQIKDVKYHKIWGTSTSKEALKMQ CSKTFPCQDVELSDINLSYVGSDGLVSALCENVGGS |
Full Sequence |
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Protein Sequence Length: 405 Download |
MASRFLIVLY ALSLFFVLAA STRQYPRQEK VFDVRDYGAY GDSKRDNAVA FTKAWNDACQ 60 WSSGRSTVYI PAGIFYVSQV TFTGPCKNFI TFIVTGTLLA PKNPDYIKQE EWILFKYVDN 120 LTVTGGGLLD GQGSYSWPLN DCNKNPSCRT LAMNIGFAFV RFSRINGLRS INSKMGHFNF 180 FSVEDFNITG VTITAPGDSP NTDGIKIGKS NHMHIFNVTI GTGDDCIAIL DGTSNLEISD 240 VRCGPGHGIS VGSLGRYKDE KNVQGLTVRD SIFNGTTDGL RIKTWAKSVS EISVSNFLYE 300 NIQMINVGNP IIIDQQYCPH GQCDSPGKYA SHVQIKDVKY HKIWGTSTSK EALKMQCSKT 360 FPCQDVELSD INLSYVGSDG LVSALCENVG GSIRGKIVPA NCEI* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-83 | 18 | 399 | 388 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 1.0e-83 | 12 | 402 | 394 | + polygalacturonase | ||
PLN02793 | PLN02793 | 9.0e-91 | 20 | 402 | 391 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-100 | 66 | 389 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 6.0e-123 | 32 | 402 | 372 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71796.1 | 0 | 29 | 402 | 32 | 410 | AC013430_5 F3F9.9 [Arabidopsis thaliana] |
RefSeq | NP_175003.1 | 0 | 11 | 402 | 10 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_175004.1 | 0 | 12 | 396 | 13 | 396 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_177961.2 | 0 | 29 | 402 | 32 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_180874.1 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 8e-17 | 121 | 389 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-17 | 121 | 389 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-17 | 121 | 389 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-17 | 121 | 389 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 8e-17 | 121 | 389 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |