Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10024654m |
Family | GH28 |
Protein Properties | Length: 478 Molecular Weight: 51637.5 Isoelectric Point: 8.6305 |
Chromosome | Chromosome/Scaffold: 4 Start: 1330283 End: 1332269 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 88 | 434 | 0 |
DGGVQLIVPPGKWLTGSFNLTSHFTLFIQKGATILASQDESEYPVVAPLPSYGQGRDAAGPTFASLISGTNLTDVVITGNNGTINGQGKYWWVKYRSGGF KSITRPYTIEIISSKDVQISNITIIDSPAWNIHPVYCNNVIVKGVTILAPIDSPNTDGINPDSCTNTLIEDCYVVSGDDCIAVKSGWDQFGIKVGMPTQQ LSIRRLTCISPDSAGIALGSEMSGGIKDVRIEDITLLQTQSAIRIKTAVGRGGYVKDIFTRRFTMKTMKYIFWMSGAYNQHPVSGFNPKAMPQITNINYR DMTADNVTQPARLDGLKNDPFTKICMSNIKIALAPEPKKLLWNCTDI |
Full Sequence |
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Protein Sequence Length: 478 Download |
MEFSMKPSTL KMIRTSFCIL VVLAISSFST MESRDLGSKG QANIEYMALN CRKHSAVLTE 60 FGAVGDGKTS NTKAFKEAIT KLAPKAADGG VQLIVPPGKW LTGSFNLTSH FTLFIQKGAT 120 ILASQDESEY PVVAPLPSYG QGRDAAGPTF ASLISGTNLT DVVITGNNGT INGQGKYWWV 180 KYRSGGFKSI TRPYTIEIIS SKDVQISNIT IIDSPAWNIH PVYCNNVIVK GVTILAPIDS 240 PNTDGINPDS CTNTLIEDCY VVSGDDCIAV KSGWDQFGIK VGMPTQQLSI RRLTCISPDS 300 AGIALGSEMS GGIKDVRIED ITLLQTQSAI RIKTAVGRGG YVKDIFTRRF TMKTMKYIFW 360 MSGAYNQHPV SGFNPKAMPQ ITNINYRDMT ADNVTQPARL DGLKNDPFTK ICMSNIKIAL 420 APEPKKLLWN CTDISGVSSK VTPKPCSLLP ENGAPVDCAF PVDKIPIESV VLNKCSA* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-18 | 1 | 446 | 460 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-23 | 58 | 366 | 320 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-24 | 58 | 418 | 372 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-24 | 174 | 434 | 266 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-52 | 56 | 353 | 322 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC63679.1 | 0 | 12 | 477 | 1 | 466 | putative polygalacturonase [Arabidopsis thaliana] |
GenBank | ABK28510.1 | 0 | 1 | 477 | 1 | 477 | unknown [Arabidopsis thaliana] |
RefSeq | NP_179968.2 | 0 | 1 | 477 | 1 | 477 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_190464.1 | 0 | 12 | 475 | 1 | 467 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002327490.1 | 0 | 42 | 477 | 18 | 450 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 58 | 415 | 30 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 58 | 415 | 30 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 58 | 415 | 30 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 58 | 415 | 30 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 3e-16 | 100 | 418 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |