Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10024718m |
Family | GH28 |
Protein Properties | Length: 395 Molecular Weight: 42980.1 Isoelectric Point: 10.5408 |
Chromosome | Chromosome/Scaffold: 4 Start: 13382217 End: 13383660 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 55 | 383 | 0 |
SLACRSRARAMVYVPRGTYLVRNLVFWGPCKNVITFKIDGTLVAPANYWSIGNSGYWILFAKVNRISVYGGIIDARGAGYWSCRKKGSHCPQGARSISFS WCSNVLLSGLTSFNSQNMHVTVHHSSNVRIQNIRIRAPSGSPNTDGIHVQSSSGVTITGGTIATGDDCIALSQGSRNIWIERVNCGPGHGISIGSLGDYA NEEGVQNVTVTSSVFTKTQNGVRIKTWARPSRGFVKNVVFRNLIMRNVGNPVIIDQNYCPNGKGCPRQSSGVKISGVTFSNIKGTSSTPIAMRLDCSGSN HCTGLRLQDIKLTYMRRSSASYCRNVHGR |
Full Sequence |
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Protein Sequence Length: 395 Download |
MANYIYFPSA IILLSIVFFF FVNSSHAMPS FNVQRYGARG DGRTDATNPF LTAWSLACRS 60 RARAMVYVPR GTYLVRNLVF WGPCKNVITF KIDGTLVAPA NYWSIGNSGY WILFAKVNRI 120 SVYGGIIDAR GAGYWSCRKK GSHCPQGARS ISFSWCSNVL LSGLTSFNSQ NMHVTVHHSS 180 NVRIQNIRIR APSGSPNTDG IHVQSSSGVT ITGGTIATGD DCIALSQGSR NIWIERVNCG 240 PGHGISIGSL GDYANEEGVQ NVTVTSSVFT KTQNGVRIKT WARPSRGFVK NVVFRNLIMR 300 NVGNPVIIDQ NYCPNGKGCP RQSSGVKISG VTFSNIKGTS STPIAMRLDC SGSNHCTGLR 360 LQDIKLTYMR RSSASYCRNV HGRASGVMVP RNCM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-82 | 30 | 391 | 369 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 7.0e-86 | 58 | 385 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-90 | 31 | 394 | 372 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 5.0e-100 | 26 | 393 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-146 | 31 | 394 | 365 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_181916.1 | 0 | 1 | 394 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002309713.1 | 0 | 7 | 394 | 4 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331633.1 | 0 | 1 | 394 | 1 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 1 | 394 | 1 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529095.1 | 0 | 9 | 394 | 2 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1czf_B | 2e-22 | 124 | 385 | 104 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 2e-22 | 124 | 385 | 104 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1nhc_F | 2e-21 | 124 | 385 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-21 | 124 | 385 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-21 | 124 | 385 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |