Basic Information | |
---|---|
Species | Capsella rubella |
Cazyme ID | Carubv10024765m |
Family | GH28 |
Protein Properties | Length: 387 Molecular Weight: 40909.7 Isoelectric Point: 8.169 |
Chromosome | Chromosome/Scaffold: 4 Start: 13376251 End: 13377891 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 47 | 373 | 0 |
ETACASSRPVTIVVPKGRFLLRSLNFDGSKCKPKPVIFRIDGTLVAPADYQVIGNEDYWIFFQHLDSVTVYGGVLDARGASLWGCKKSGKKCPSGATTIG FQSSSNVVVSGLTSLNSQMFHVVINGCNNVKLQGVKVLAAGNSPNTDGIHVQSSSTVSIMNTKISTGDDCVSIGPGTNGLWIENVACGPGHGISIGSLGK DSVESGVQNVTVKTVTFTGTDNGVRIKSWARPSSGFAKDIRFQHCVMNNVENPIIIDQNYCPDHNCPVQVSGIKISDVLFVDIHGTSATEVGVKLDCSSK KPCTGIRLEDVKLTYQNKPAASACTHA |
Full Sequence |
---|
Protein Sequence Length: 387 Download |
MASLLVISVF FFFSISSCSA QSYNVLSFGA KPDGKTDATK AFMAVWETAC ASSRPVTIVV 60 PKGRFLLRSL NFDGSKCKPK PVIFRIDGTL VAPADYQVIG NEDYWIFFQH LDSVTVYGGV 120 LDARGASLWG CKKSGKKCPS GATTIGFQSS SNVVVSGLTS LNSQMFHVVI NGCNNVKLQG 180 VKVLAAGNSP NTDGIHVQSS STVSIMNTKI STGDDCVSIG PGTNGLWIEN VACGPGHGIS 240 IGSLGKDSVE SGVQNVTVKT VTFTGTDNGV RIKSWARPSS GFAKDIRFQH CVMNNVENPI 300 IIDQNYCPDH NCPVQVSGIK ISDVLFVDIH GTSATEVGVK LDCSSKKPCT GIRLEDVKLT 360 YQNKPAASAC THAGGIEAGF FQPNCL* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 6.0e-86 | 24 | 385 | 369 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 5.0e-88 | 50 | 366 | 319 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-89 | 25 | 383 | 368 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-103 | 19 | 385 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 6.0e-129 | 23 | 386 | 367 | + polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK28534.1 | 0 | 1 | 386 | 1 | 384 | unknown [Arabidopsis thaliana] |
EMBL | CAB75804.1 | 0 | 20 | 386 | 20 | 383 | polygalacturonase-like protein [Arabidopsis thaliana] |
RefSeq | NP_181915.1 | 0 | 1 | 386 | 1 | 384 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | NP_191544.2 | 0 | 20 | 386 | 20 | 388 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002529090.1 | 0 | 3 | 386 | 10 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-20 | 145 | 360 | 154 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 5e-17 | 109 | 367 | 95 | 352 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 5e-17 | 109 | 367 | 95 | 352 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_B | 0.00000000000001 | 148 | 370 | 110 | 339 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_A | 0.00000000000001 | 148 | 370 | 110 | 339 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |