Basic Information | |
---|---|
Species | Capsella rubella |
Cazyme ID | Carubv10024886m |
Family | GH28 |
Protein Properties | Length: 405 Molecular Weight: 43934.3 Isoelectric Point: 8.778 |
Chromosome | Chromosome/Scaffold: 4 Start: 11984902 End: 11986617 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 57 | 393 | 0 |
ACGRRSGSSKIYVPKGTFYLGGVEFVGPCKNPIEIVIDGTLLAPANPRDIKQDTWINFRYINDLSISGSGLLDGQGQQSWPLNDCHKNPNCPKLAMTMGF AFVNNSNIKDITSLNSKMGHFNFFSVHHFNITGVTITAPADSPNTDGIKMGSCSNIHISKTNIGTGDDCIAILSGTTNLDISNVKCGPGHGISVGSLGKN KDEKNVKDLTVRDIVFNGTSDGIRIKTWESSASKILVSNFVYENIQMIDVGNPINIDQKYCPHPPCEHEKKGESHVQIQDLKLKNIYGTSKNKVAVNLQC SKSFPCKNVELIDINLKHNGIKGGPSTAVCENVDGSV |
Full Sequence |
---|
Protein Sequence Length: 405 Download |
MVCMAYAFKI LCLFLLFIAV ASRPTVKPKV FNVRRHGSKP DGKTDNANAF TSIWSRACGR 60 RSGSSKIYVP KGTFYLGGVE FVGPCKNPIE IVIDGTLLAP ANPRDIKQDT WINFRYINDL 120 SISGSGLLDG QGQQSWPLND CHKNPNCPKL AMTMGFAFVN NSNIKDITSL NSKMGHFNFF 180 SVHHFNITGV TITAPADSPN TDGIKMGSCS NIHISKTNIG TGDDCIAILS GTTNLDISNV 240 KCGPGHGISV GSLGKNKDEK NVKDLTVRDI VFNGTSDGIR IKTWESSASK ILVSNFVYEN 300 IQMIDVGNPI NIDQKYCPHP PCEHEKKGES HVQIQDLKLK NIYGTSKNKV AVNLQCSKSF 360 PCKNVELIDI NLKHNGIKGG PSTAVCENVD GSVSGKMVPQ HCLN* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 6.0e-73 | 1 | 404 | 412 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-73 | 28 | 400 | 378 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 3.0e-79 | 1 | 404 | 407 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-88 | 58 | 389 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 7.0e-111 | 31 | 402 | 373 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_175003.1 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179147.1 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179149.2 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_181560.1 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_193112.2 | 0 | 1 | 404 | 1 | 404 | polygalacturonase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-20 | 109 | 367 | 100 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.000000000000001 | 128 | 389 | 80 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000001 | 128 | 389 | 80 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000000001 | 128 | 389 | 80 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.000000000000001 | 128 | 389 | 80 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |