Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10024902m |
Family | GH28 |
Protein Properties | Length: 395 Molecular Weight: 42548.5 Isoelectric Point: 9.9801 |
Chromosome | Chromosome/Scaffold: 4 Start: 13385916 End: 13387383 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 55 | 383 | 0 |
SLACGSRAQSMVYIPRGTYLVGNIVFWGPCKNIITFKVDGTLVAPANYWSIGNSGYWILFAKVNRILVYGGTIDAKGAAYWSCRKKGGYCPQGARSLSFS WCNNVLLSGLTSFNSQNIHITVHHSSNVRIQNIRIRAPSGSPNTDGIIVQSSSGVTISGATIGTGDDCIALNQGAKNVWIERVSCGPGHGISIGSLGDYA NEEGVQNVTVTSSVFTKTQNGVRIKTWAKPSTGFVRNVEFRNLVMRNVENPVIIDQNYCPNRNGCSRQGSGIKISGVTYANIKGTSTTPISMKLDCSGSN PCTGLMLRNINLTYLRRSSASYCRNAHGR |
Full Sequence |
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Protein Sequence Length: 395 Download |
MANNTSFPCA IILLFCVSIF LTNSSHAMQS FNVQRYGARG DGRTDATKPF LTAWSLACGS 60 RAQSMVYIPR GTYLVGNIVF WGPCKNIITF KVDGTLVAPA NYWSIGNSGY WILFAKVNRI 120 LVYGGTIDAK GAAYWSCRKK GGYCPQGARS LSFSWCNNVL LSGLTSFNSQ NIHITVHHSS 180 NVRIQNIRIR APSGSPNTDG IIVQSSSGVT ISGATIGTGD DCIALNQGAK NVWIERVSCG 240 PGHGISIGSL GDYANEEGVQ NVTVTSSVFT KTQNGVRIKT WAKPSTGFVR NVEFRNLVMR 300 NVENPVIIDQ NYCPNRNGCS RQGSGIKISG VTYANIKGTS TTPISMKLDC SGSNPCTGLM 360 LRNINLTYLR RSSASYCRNA HGRSSGVLVP RNCM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-87 | 20 | 391 | 379 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-91 | 31 | 394 | 372 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 7.0e-94 | 58 | 381 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 6.0e-110 | 26 | 393 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 5.0e-150 | 13 | 394 | 383 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_181916.1 | 0 | 1 | 394 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002275740.1 | 0 | 7 | 394 | 5 | 389 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002331634.1 | 0 | 11 | 394 | 10 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529095.1 | 0 | 9 | 394 | 8 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529097.1 | 0 | 15 | 394 | 9 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 4e-22 | 121 | 379 | 74 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-22 | 121 | 379 | 74 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-22 | 121 | 379 | 74 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-22 | 121 | 379 | 74 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 4e-22 | 121 | 379 | 74 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |