| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10024927m |
| Family | CBM43 |
| Protein Properties | Length: 131 Molecular Weight: 14791.1 Isoelectric Point: 9.514 |
| Chromosome | Chromosome/Scaffold: 4 Start: 13043742 End: 13044134 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 40 | 118 | 3.5e-25 |
| WCVDNPYAHFTRVIWNLKRACENGADCSPMEKGRRCQDLDYYRSRASYAFNDYYQKNPTPRNCDFGGAAVLTIQDPSTS | |||
| Full Sequence |
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| Protein Sequence Length: 131 Download |
| MKTRMLINLV VLISVARTAE AIGRLAAQQN TSIILTFTLW CVDNPYAHFT RVIWNLKRAC 60 ENGADCSPME KGRRCQDLDY YRSRASYAFN DYYQKNPTPR NCDFGGAAVL TIQDPSTSKP 120 LHICKNKIKL * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 1.0e-11 | 39 | 109 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-23 | 39 | 118 | 81 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG38222.1 | 2e-18 | 40 | 119 | 104 | 183 | GPI-anchored protein [Zea mays] |
| RefSeq | NP_001131448.1 | 4e-17 | 40 | 119 | 109 | 188 | hypothetical protein LOC100192780 [Zea mays] |
| RefSeq | NP_001142053.1 | 2e-18 | 40 | 119 | 116 | 195 | hypothetical protein LOC100274209 [Zea mays] |
| RefSeq | NP_181821.1 | 0 | 1 | 129 | 1 | 127 | glycosyl hydrolase family protein 17 [Arabidopsis thaliana] |
| RefSeq | XP_002441577.1 | 9e-20 | 40 | 118 | 74 | 153 | hypothetical protein SORBIDRAFT_09g029700 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 0.000000002 | 40 | 116 | 13 | 90 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| Signal Peptide | |||||
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| Cleavage Site | |||||
| 21 | |||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| CK195227 | 80 | 40 | 119 | 4e-21 |
| BE358995 | 80 | 40 | 118 | 8e-20 |
| FL921534 | 80 | 40 | 118 | 2e-19 |
| CF445569 | 80 | 40 | 118 | 2e-18 |
| DR971407 | 80 | 40 | 119 | 3e-18 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Arabidopsis lyrata | 903671 | ||||
| Arabidopsis thaliana | AT2G42930.1 | ||||
| Glycine max | Glyma15g23435.2 | ||||
| Sequence Alignments |
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| Phylogeny |
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