Basic Information | |
---|---|
Species | Capsella rubella |
Cazyme ID | Carubv10024933m |
Family | CE8 |
Protein Properties | Length: 356 Molecular Weight: 39568.2 Isoelectric Point: 8.6463 |
Chromosome | Chromosome/Scaffold: 4 Start: 1784762 End: 1786597 |
Description | methylesterase PCR A |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 43 | 339 | 0 |
DIVVAKDGTGNYTTLKEAVDAVPDNNKKRFIIYLKRGVYKETIEIGEMKTNLMLIGDGRDISLLTGSLNFKDGYTILKSATLATCANGFIALDLWFQNTA GPTKNQAVALRVNADLSVIYRCRIDGYQDTLFAEQHRQFYRDCYITGTIDFIFGDAAAVFQNCEIVARKPLSGQSNVLTAQGRIKPTRNSGFSLQRCNIT ASLDLSPVKGTVKSFLGRPWKNFSRVVIMQSFIGDFIDPAGWTPMDHDVGRLSTLFYGEYENKGLGADTRRRVKWQGYKLITDPKEALEFTVTSLIN |
Full Sequence |
---|
Protein Sequence Length: 356 Download |
TISFTMNGND ELQTARDGFP LWMNNVDKKI IGATPKVLKM NADIVVAKDG TGNYTTLKEA 60 VDAVPDNNKK RFIIYLKRGV YKETIEIGEM KTNLMLIGDG RDISLLTGSL NFKDGYTILK 120 SATLATCANG FIALDLWFQN TAGPTKNQAV ALRVNADLSV IYRCRIDGYQ DTLFAEQHRQ 180 FYRDCYITGT IDFIFGDAAA VFQNCEIVAR KPLSGQSNVL TAQGRIKPTR NSGFSLQRCN 240 ITASLDLSPV KGTVKSFLGR PWKNFSRVVI MQSFIGDFID PAGWTPMDHD VGRLSTLFYG 300 EYENKGLGAD TRRRVKWQGY KLITDPKEAL EFTVTSLING ELWLNSTGVP YEEGL* 360 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02201 | PLN02201 | 7.0e-137 | 17 | 355 | 339 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02468 | PLN02468 | 3.0e-138 | 12 | 355 | 344 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02488 | PLN02488 | 1.0e-170 | 2 | 355 | 354 | + probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 4.0e-178 | 43 | 341 | 299 | + Pectinesterase. | ||
PLN02301 | PLN02301 | 0 | 9 | 355 | 347 | + pectinesterase/pectinesterase inhibitor |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172624.1 | 0 | 19 | 355 | 222 | 557 | PMEPCRA (METHYLESTERASE PCR A); enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
Swiss-Prot | Q1JPL7 | 0 | 19 | 355 | 222 | 557 | PME18_ARATH RecName: Full=Pectinesterase/pectinesterase inhibitor 18; AltName: Full=AtPMEpcrA; Contains: RecName: Full=Pectinesterase inhibitor 18; AltName: Full=Pectin methylesterase inhibitor 18; Contains: RecName: Full=Bifunctional pectinesterase 18/rRNA N-glycosylase; Short=PE 18; AltName: Full=Ribosome-inactivating protein; AltName: Full=Pectin methylesterase 18; AltName: Full=Pectin methylesterase 4; Short=AtPME4; Flags: Precursor |
RefSeq | XP_002266980.1 | 0 | 10 | 355 | 186 | 528 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317208.1 | 0 | 9 | 355 | 206 | 549 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518523.1 | 0 | 9 | 355 | 204 | 547 | Pectinesterase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 0 | 42 | 355 | 3 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 0 | 43 | 355 | 8 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 3uw0_A | 1e-20 | 18 | 263 | 10 | 270 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 3e-17 | 54 | 262 | 18 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 3e-17 | 54 | 262 | 18 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
HO777316 | 340 | 19 | 356 | 0 |
GO241843 | 286 | 52 | 337 | 0 |
DT759654 | 299 | 19 | 317 | 0 |
CV886778 | 282 | 75 | 356 | 0 |
GO241843 | 31 | 325 | 355 | 5.4 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|