Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10025126m |
Family | CE8 |
Protein Properties | Length: 345 Molecular Weight: 38174.2 Isoelectric Point: 8.7965 |
Chromosome | Chromosome/Scaffold: 4 Start: 239289 End: 241356 |
Description | pectinesterase 11 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 51 | 326 | 0 |
RVDQSGKGDFTKIQEAIESIPPNLNNIQLYYIWVKPGIYREKVVIPADKPYITLSGTRASNTFLIWNDGEDILESPTLTIFASDFVCRFLTIQNKFGTAG RAVALRVAADRAAFYGCVITSYQDTLLDDNGNHYFNNCYIEGATDFICGSASSLYEKCHLHSLSPNNGSITAQMRTSATEKSGFTFLGCKLTGSGSTYLG RPWGAYSRVVFAYSFFSNVVAPQGWNQWGDSTKQNTVYYGEYKCYGPGADRGQRVKWSKQLSNNEATVFLSKDFIG |
Full Sequence |
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Protein Sequence Length: 345 Download |
MGLLYKTNSK CSFAKYNYHI IITNIFILSS ITSSSMASSS SIDFSTAILI RVDQSGKGDF 60 TKIQEAIESI PPNLNNIQLY YIWVKPGIYR EKVVIPADKP YITLSGTRAS NTFLIWNDGE 120 DILESPTLTI FASDFVCRFL TIQNKFGTAG RAVALRVAAD RAAFYGCVIT SYQDTLLDDN 180 GNHYFNNCYI EGATDFICGS ASSLYEKCHL HSLSPNNGSI TAQMRTSATE KSGFTFLGCK 240 LTGSGSTYLG RPWGAYSRVV FAYSFFSNVV APQGWNQWGD STKQNTVYYG EYKCYGPGAD 300 RGQRVKWSKQ LSNNEATVFL SKDFIGGKDW LRPAPSHFKI APKI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 4.0e-81 | 49 | 332 | 302 | + pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-84 | 49 | 336 | 300 | + pectinesterase family protein | ||
PLN02497 | PLN02497 | 1.0e-84 | 50 | 335 | 299 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 4.0e-102 | 50 | 333 | 301 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 0 | 49 | 332 | 284 | + putative pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79458.1 | 0 | 34 | 338 | 28 | 332 | hypothetical protein [Vitis vinifera] |
EMBL | CBI37658.1 | 0 | 34 | 338 | 46 | 350 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_179755.1 | 0 | 1 | 343 | 1 | 344 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002280496.1 | 0 | 44 | 338 | 1 | 293 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002305435.1 | 0 | 26 | 339 | 5 | 315 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 50 | 340 | 9 | 317 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1.4013e-45 | 52 | 332 | 7 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 3e-16 | 52 | 311 | 35 | 349 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 4e-16 | 47 | 335 | 6 | 342 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 4e-16 | 47 | 335 | 6 | 342 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
AM722128 | 251 | 49 | 299 | 0 |
AM721699 | 249 | 49 | 297 | 0 |
EX283718 | 181 | 164 | 344 | 0 |
EX278581 | 181 | 164 | 344 | 0 |
DR952425 | 202 | 49 | 250 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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