Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10025141m |
Family | CBM43 |
Protein Properties | Length: 541 Molecular Weight: 58903.9 Isoelectric Point: 6.6252 |
Chromosome | Chromosome/Scaffold: 4 Start: 11625531 End: 11627377 |
Description | glycosyl hydrolase family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 451 | 533 | 8.6e-29 |
WCMAKQEATEKQLQANIDWVCSQGIDCKPISPGGMCFDNNNMKTRSTFVMNAYYQSQGCTENACDFKGSGMVTTTNPITTSTC | |||
CBM43 | 355 | 437 | 1.4e-31 |
WCVAKQDATDTKLQANIDWVCSQGIDCKPISPGGVCFDNNNMKSRSSYIMNAYYQSKGGPDDACNFSGTGMFTTNNPSTSTCN | |||
GH17 | 30 | 338 | 0 |
IGINYGTLGNLQPPQQVVDFIKTKTKLDSVKIFDANPDILRGLAGTEISVTIMVPNGNIPAMVDVANARQWVAANVLPFHQQIKFKYLCVGNEILVSKDN NLISNLVPAMKSLNEALKASGLEYIKVTTPHAYTITFNRDAPSKSRFNEDQKDLFTKILEFHRQAKSPFMFNAYTFFTMDQNNVNYAIFGTSNAVTDSNT QHTYNNLFDAMMDAMYSAMNAVGFGDVDMAIGETGWPTACDAAWCSPENAAQYNLNIIKRANVIGTPLMPNRHVDIFIFALFNEDGKPGPTSERNWGLFK PDFSPVYDV |
Full Sequence |
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Protein Sequence Length: 541 Download |
MAKTTRCSTL PFLPIVAAMI FQLSAVTSAI GINYGTLGNL QPPQQVVDFI KTKTKLDSVK 60 IFDANPDILR GLAGTEISVT IMVPNGNIPA MVDVANARQW VAANVLPFHQ QIKFKYLCVG 120 NEILVSKDNN LISNLVPAMK SLNEALKASG LEYIKVTTPH AYTITFNRDA PSKSRFNEDQ 180 KDLFTKILEF HRQAKSPFMF NAYTFFTMDQ NNVNYAIFGT SNAVTDSNTQ HTYNNLFDAM 240 MDAMYSAMNA VGFGDVDMAI GETGWPTACD AAWCSPENAA QYNLNIIKRA NVIGTPLMPN 300 RHVDIFIFAL FNEDGKPGPT SERNWGLFKP DFSPVYDVGV LKDGVKIPPS TNGKWCVAKQ 360 DATDTKLQAN IDWVCSQGID CKPISPGGVC FDNNNMKSRS SYIMNAYYQS KGGPDDACNF 420 SGTGMFTTNN PSTSTCNIPS GGGSQSSGGK WCMAKQEATE KQLQANIDWV CSQGIDCKPI 480 SPGGMCFDNN NMKTRSTFVM NAYYQSQGCT ENACDFKGSG MVTTTNPITT STCALTTVTL 540 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 9.0e-23 | 450 | 521 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
pfam07983 | X8 | 2.0e-23 | 354 | 425 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 6.0e-33 | 450 | 527 | 78 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
smart00768 | X8 | 2.0e-37 | 354 | 437 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-80 | 30 | 338 | 316 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK76666.1 | 0 | 33 | 436 | 32 | 447 | putative beta-1,3-glucanase [Arabidopsis thaliana] |
GenBank | AAK76666.1 | 3e-24 | 441 | 527 | 349 | 442 | putative beta-1,3-glucanase [Arabidopsis thaliana] |
RefSeq | NP_181494.1 | 0 | 33 | 540 | 33 | 549 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | NP_191103.1 | 0 | 33 | 436 | 32 | 447 | glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative [Arabidopsis thaliana] |
RefSeq | NP_191103.1 | 3e-24 | 441 | 527 | 349 | 442 | glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3f55_D | 0 | 30 | 331 | 2 | 306 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
PDB | 3f55_C | 0 | 30 | 331 | 2 | 306 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
PDB | 3f55_B | 0 | 30 | 331 | 2 | 306 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
PDB | 3f55_A | 0 | 30 | 331 | 2 | 306 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
PDB | 3em5_D | 0 | 30 | 331 | 2 | 306 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |