y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10025146m |
Family | GH28 |
Protein Properties | Length: 408 Molecular Weight: 43529.2 Isoelectric Point: 5.7355 |
Chromosome | Chromosome/Scaffold: 4 Start: 13373294 End: 13374760 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 59 | 388 | 0 |
DVACASANPTTIIVPKGRFLVGTLVFQGNECKQAPISVRIAGSIVAPGDFRVISSSEHWISFADVTDVSIYGGILDAQGTSLWKCKNNGGHNCPIGAKSL LFSGSNNIYINGLTSINSQRFHIVIDKSNNINIDGVKVSADANSPNTDGIHVESSHFVHITNSRIATGDDCISIGPGSTSVFIQNIQCGPGHGISIGSLG RVEEEQGVDNVTVSNVDFTGTQNGVRIKTWGKDSTSFARNIIFQHINMKMVKNPIIIDQHYCLDKPCPTQESGVKVSNVRYEDIHGTSNTEVAVLLDCSK EEPCTGIVMDDVNLVSVNRPAQSSCDNVNG |
Full Sequence |
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Protein Sequence Length: 408 Download |
MVYNNTLCIV LPLALIFLDF ILLSSLGHPT SSTTLNVISY GAKPDGSTDS TKAFLAAWDV 60 ACASANPTTI IVPKGRFLVG TLVFQGNECK QAPISVRIAG SIVAPGDFRV ISSSEHWISF 120 ADVTDVSIYG GILDAQGTSL WKCKNNGGHN CPIGAKSLLF SGSNNIYING LTSINSQRFH 180 IVIDKSNNIN IDGVKVSADA NSPNTDGIHV ESSHFVHITN SRIATGDDCI SIGPGSTSVF 240 IQNIQCGPGH GISIGSLGRV EEEQGVDNVT VSNVDFTGTQ NGVRIKTWGK DSTSFARNII 300 FQHINMKMVK NPIIIDQHYC LDKPCPTQES GVKVSNVRYE DIHGTSNTEV AVLLDCSKEE 360 PCTGIVMDDV NLVSVNRPAQ SSCDNVNGLA NDVVPYTPCL RTEIITI* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-89 | 62 | 386 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 6.0e-90 | 31 | 387 | 363 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-90 | 29 | 400 | 380 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-105 | 31 | 386 | 364 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-114 | 30 | 400 | 373 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 10 | 400 | 7 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABD33834.1 | 0 | 10 | 400 | 7 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
GenBank | ABV32553.1 | 0 | 10 | 400 | 7 | 393 | endopolygalacturonase [Prunus persica] |
RefSeq | NP_181914.1 | 0 | 1 | 405 | 1 | 403 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002529090.1 | 0 | 17 | 400 | 11 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-19 | 115 | 374 | 100 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000000002 | 122 | 383 | 69 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000002 | 122 | 383 | 69 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000002 | 122 | 383 | 69 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000002 | 122 | 383 | 69 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |