Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10025174m |
Family | GH28 |
Protein Properties | Length: 431 Molecular Weight: 46410.5 Isoelectric Point: 8.8272 |
Chromosome | Chromosome/Scaffold: 4 Start: 12595175 End: 12597329 |
Description | polygalacturonase abscission zone A. thaliana |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 88 | 413 | 0 |
WKKACSSNGAVNLLVPKGSTYLLKSIQFTGPCKSILTVQIFGTLSASQKRSDYKDISKWITFDNVNDLSVEGDATGTVDGNGETWWENSCKRNKAKPCTK APTALTFYNSKNLRVNNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSKSIIGTGDDCISIESGSQNVQINDITCGPGHGIS IGSLGDDNTKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIVFQNIEMENVKNPIIIDQEYCDKSKCTSQKSAVQVKNVVYRNISGTSASDMAITF NCSKNYPCQGIVLDKVNIKGGKATCS |
Full Sequence |
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Protein Sequence Length: 431 Download |
MARYSKQLVT LFLLWALLML TWCEASRISV KGYDHSYKNS LIKRRDDITG LKSFVRASLR 60 TPTTVSVSEF GAKGDGETDD TQAFVNAWKK ACSSNGAVNL LVPKGSTYLL KSIQFTGPCK 120 SILTVQIFGT LSASQKRSDY KDISKWITFD NVNDLSVEGD ATGTVDGNGE TWWENSCKRN 180 KAKPCTKAPT ALTFYNSKNL RVNNLRVRNA QQIQISIEKC SNVQVSNVVV TAPADSPNTD 240 GIHITNTQNI RVSKSIIGTG DDCISIESGS QNVQINDITC GPGHGISIGS LGDDNTKAFV 300 SGVTVDGAKL SGTDNGVRIK TYQGGSGTAS NIVFQNIEME NVKNPIIIDQ EYCDKSKCTS 360 QKSAVQVKNV VYRNISGTSA SDMAITFNCS KNYPCQGIVL DKVNIKGGKA TCSNANIIDK 420 GAVLPQCNSI * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-86 | 54 | 406 | 358 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-102 | 63 | 415 | 363 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 5.0e-113 | 92 | 415 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 9.0e-129 | 56 | 405 | 353 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 0 | 21 | 428 | 412 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC02763.1 | 0 | 1 | 429 | 1 | 425 | putative polygalacturonase [Arabidopsis thaliana] |
GenBank | AAL84942.1 | 0 | 1 | 429 | 1 | 432 | At2g41850/T11A7.5 [Arabidopsis thaliana] |
EMBL | CAC05657.1 | 0 | 8 | 429 | 7 | 433 | endopolygalacturonase [Brassica napus] |
RefSeq | NP_191310.1 | 0 | 1 | 427 | 1 | 430 | ADPG1; polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_850359.1 | 0 | 1 | 429 | 1 | 432 | PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA); polygalacturonase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 4e-24 | 89 | 414 | 15 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-24 | 89 | 414 | 15 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-24 | 89 | 414 | 15 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 4e-24 | 89 | 414 | 15 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 4e-24 | 89 | 414 | 15 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |