| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10025381m |
| Family | GT43 |
| Protein Properties | Length: 340 Molecular Weight: 38714.4 Isoelectric Point: 9.4957 |
| Chromosome | Chromosome/Scaffold: 4 Start: 10546957 End: 10548164 |
| Description | Nucleotide-diphospho-sugar transferases superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT43 | 138 | 340 | 0 |
| MANTLRLVPPPLLWIVVEKHSDSDEKSSSTMLRKTGIMYRRIVFKENFTSMETELDHQRNLALRHIEQHKLSGIVHFAGLNNIYDLDFFDKIRDIEVFGT WPMALLSANRKRVIVEGPVCESSQVLGWHLRKINNETETKPPIHISSFAFNSSILWDPERWGRPSSVEGTKQDSIKYVKQVVLEDDTKLKGLPGQDCSKI MLW | |||
| Full Sequence |
|---|
| Protein Sequence Length: 340 Download |
| MGSLERSKKK VQVWKKALIH FSLCFVMGFF TGFAPAGKAS FFSNSDTTTY TSTKSQIPPQ 60 PFENSTYAPH SLLNRTLIIN SQAEAPAPAE SRESGEETRS LSETEDENQV KVTPRGLVIV 120 VTPVMTKDRY KNVLLRRMAN TLRLVPPPLL WIVVEKHSDS DEKSSSTMLR KTGIMYRRIV 180 FKENFTSMET ELDHQRNLAL RHIEQHKLSG IVHFAGLNNI YDLDFFDKIR DIEVFGTWPM 240 ALLSANRKRV IVEGPVCESS QVLGWHLRKI NNETETKPPI HISSFAFNSS ILWDPERWGR 300 PSSVEGTKQD SIKYVKQVVL EDDTKLKGLP GQDCSKIMLW 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03360 | Glyco_transf_43 | 1.0e-65 | 138 | 340 | 217 | + Glycosyltransferase family 43. | ||
| cd00218 | GlcAT-I | 2.0e-80 | 117 | 340 | 229 | + Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43). | ||
| PLN02458 | PLN02458 | 0 | 1 | 340 | 343 | + transferase, transferring glycosyl groups | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0015018 | galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX33319.1 | 0 | 1 | 340 | 1 | 335 | secondary cell wall-related glycosyltransferase family 43 [Populus tremula x Populus tremuloides] |
| GenBank | ABP65661.1 | 0 | 1 | 340 | 1 | 335 | secondary wall-associated glycosyltransferase family 43B [Populus tremula x Populus alba] |
| EMBL | CAI93178.1 | 0 | 1 | 340 | 1 | 336 | glycosyltransferase [Populus balsamifera] |
| RefSeq | NP_181246.1 | 0 | 1 | 340 | 1 | 339 | IRX9 (IRREGULAR XYLEM 9); transferase, transferring glycosyl groups / xylosyltransferase [Arabidopsis thaliana] |
| RefSeq | XP_002323456.1 | 0 | 1 | 340 | 1 | 336 | glycosyl transferase [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1v84_B | 0.000000000008 | 120 | 340 | 7 | 229 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 1v84_A | 0.000000000008 | 120 | 340 | 7 | 229 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 1v83_B | 0.000000000008 | 120 | 340 | 7 | 229 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 1v83_A | 0.000000000008 | 120 | 340 | 7 | 229 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 1v82_B | 0.000000000008 | 120 | 340 | 7 | 229 | A Chain A, Crystal Structure Of Human Glcat-P Apo Form |
