Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10025460m |
Family | CE8 |
Protein Properties | Length: 372 Molecular Weight: 41041.9 Isoelectric Point: 5.2217 |
Chromosome | Chromosome/Scaffold: 4 Start: 10378809 End: 10380611 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 55 | 343 | 0 |
IVDLNGNGNFTTVQKAIDAVPDFSLSRALIIINAGIYREKVIVSEKKTNILMQGRGYQRTIIEWNDTAHSSGGNPNSYTFAIFAANFVASNISFKNSAPE PEPGAEGAQAVAVRIDGDQVAFYSCGFYGFQDTLLDNTGRHYFKNCFIQGSIDFIFGKGLSLYQDCVIRSIAKQSKADITGFITAQGRESEGERSGFSFL DCNIDGSGKVLLGRAWRGFATVVFSQSYMSSVISSEGWGDWENVTRDKTVTFGEHRCYGEGANYKERVAYGKQLTDSEASSYTDISYID |
Full Sequence |
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Protein Sequence Length: 372 Download |
MSIKITIVVL IVLVTTILSL FAIHLSKHGE FKGVYGNQPK HHQHQDLSLH SLVFIVDLNG 60 NGNFTTVQKA IDAVPDFSLS RALIIINAGI YREKVIVSEK KTNILMQGRG YQRTIIEWND 120 TAHSSGGNPN SYTFAIFAAN FVASNISFKN SAPEPEPGAE GAQAVAVRID GDQVAFYSCG 180 FYGFQDTLLD NTGRHYFKNC FIQGSIDFIF GKGLSLYQDC VIRSIAKQSK ADITGFITAQ 240 GRESEGERSG FSFLDCNIDG SGKVLLGRAW RGFATVVFSQ SYMSSVISSE GWGDWENVTR 300 DKTVTFGEHR CYGEGANYKE RVAYGKQLTD SEASSYTDIS YIDGDQWLNG TTPPELNSFE 360 ELEEYDLISS Y* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 1.0e-92 | 53 | 348 | 303 | + probable pectinesterase | ||
PLN02497 | PLN02497 | 8.0e-99 | 55 | 350 | 298 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 9.0e-102 | 56 | 356 | 302 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 2.0e-121 | 53 | 348 | 303 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 3.0e-129 | 53 | 348 | 300 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO22722.1 | 0 | 41 | 371 | 82 | 407 | putative pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_181209.1 | 0 | 41 | 371 | 82 | 407 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002264941.1 | 0 | 53 | 348 | 14 | 309 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002326223.1 | 0 | 51 | 348 | 16 | 313 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519425.1 | 0 | 63 | 349 | 82 | 368 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 55 | 354 | 10 | 314 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 7e-40 | 55 | 351 | 6 | 307 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 6e-17 | 64 | 337 | 18 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 6e-17 | 64 | 337 | 18 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 6e-17 | 64 | 337 | 18 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |