Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10025465m |
Family | GH28 |
Protein Properties | Length: 395 Molecular Weight: 42435.5 Isoelectric Point: 10.4908 |
Chromosome | Chromosome/Scaffold: 4 Start: 13390085 End: 13391790 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 54 | 382 | 0 |
WQAACRSAASVTVTVPRGSFLLKPVEFRGPCRSRITFQIYGTIVAPSDYRGLGNSGYWILFVKVNRISINGGTLDARGASFWACRKSGKSCPAGARSMTF NWANDIVVTGLTSINSQATHMVINSCNNVVVRKVKLVAPDQSPNTDGLHVQASAGVTVTDSTFQTGDDCISIGPGTRNLYMSKLNCGPGHGISIGSLGRD ANEAGVQNITLVNSVFSGSDNGVRIKTWARQSTGFVRNVLFQNLVMKNVQNPIIVDQNYCPTHQGCPKQGSGVKISQVVYRNIQGTSRTQQALTFDCSRS NPCQAIRLHDIKLTFNGRSATSTCKNIKG |
Full Sequence |
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Protein Sequence Length: 395 Download |
MDNKNKLVAV LLIMFFSSFL LMRSTTAANN YNVVNFGAKP DGRTDSTRAF LGAWQAACRS 60 AASVTVTVPR GSFLLKPVEF RGPCRSRITF QIYGTIVAPS DYRGLGNSGY WILFVKVNRI 120 SINGGTLDAR GASFWACRKS GKSCPAGARS MTFNWANDIV VTGLTSINSQ ATHMVINSCN 180 NVVVRKVKLV APDQSPNTDG LHVQASAGVT VTDSTFQTGD DCISIGPGTR NLYMSKLNCG 240 PGHGISIGSL GRDANEAGVQ NITLVNSVFS GSDNGVRIKT WARQSTGFVR NVLFQNLVMK 300 NVQNPIIVDQ NYCPTHQGCP KQGSGVKISQ VVYRNIQGTS RTQQALTFDC SRSNPCQAIR 360 LHDIKLTFNG RSATSTCKNI KGVKAGVVMP RGCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 2.0e-92 | 58 | 381 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-99 | 24 | 391 | 375 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-104 | 33 | 394 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-107 | 31 | 393 | 371 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-179 | 24 | 394 | 372 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_181917.1 | 0 | 1 | 394 | 1 | 392 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002309713.1 | 0 | 7 | 394 | 5 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 7 | 394 | 5 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529097.1 | 0 | 11 | 394 | 5 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529098.1 | 0 | 11 | 394 | 5 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-20 | 125 | 367 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 1e-19 | 124 | 380 | 81 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 1e-19 | 124 | 380 | 81 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 1e-19 | 124 | 380 | 81 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 2iq7_G | 2e-19 | 44 | 380 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |