Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10025915m |
Family | GH3 |
Protein Properties | Length: 785 Molecular Weight: 84107.1 Isoelectric Point: 8.1837 |
Chromosome | Chromosome/Scaffold: 8 Start: 12182886 End: 12186318 |
Description | beta-D-xylosidase 4 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 92 | 341 | 0 |
GVTRLGIPTYEWWSEALHGVSYIGPGTRFSGQVPGATSFPQVILTAASFNVSLFQAIGKVVSTEARAMYNVGLAGLTYWSPNVNIFRDPRWGRGQETPGE DPLLASKYASGYVKGLQETDGGDSNRLKVAACCKHYTAYDVDNWKGVERYSFNAVVTQQDMDDTYQPPFKSCVVDGNVASVMCSYNQVNGKPTCADPDLL SGVIRGEWKLNGYIVSDCDSVDVLYKNQHYTKTPAEAAAVSILAGLDLNC |
Full Sequence |
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Protein Sequence Length: 785 Download |
MGSSSPLTRR NRAPPSSVSS VFLIFLCFFL CFSDSSNAQS SPVFACDVAA NPSLAAFGFC 60 NTVLKIEYRV ADLVARLTLQ EKIGFLVSKA NGVTRLGIPT YEWWSEALHG VSYIGPGTRF 120 SGQVPGATSF PQVILTAASF NVSLFQAIGK VVSTEARAMY NVGLAGLTYW SPNVNIFRDP 180 RWGRGQETPG EDPLLASKYA SGYVKGLQET DGGDSNRLKV AACCKHYTAY DVDNWKGVER 240 YSFNAVVTQQ DMDDTYQPPF KSCVVDGNVA SVMCSYNQVN GKPTCADPDL LSGVIRGEWK 300 LNGYIVSDCD SVDVLYKNQH YTKTPAEAAA VSILAGLDLN CGSFLGQYTE EAVKAGLVNV 360 AAIDKAISNN FLTLMRLGFF DGDPKKQIYG GLGPKDVCTP ANQELAAEAA RQGIVLLKNN 420 GCLPLPPKAI KTLAVIGPNA NVTKTMIGNY EGTPCKYTTP LQGLAGTVST TYLPGCSNVA 480 CAVADVAGAT KLAATADVTV LVIGADQSIE AESRDRVDLN LPGQQSKLVT EVAKAAKGPV 540 LLVIMSGGGF DITFAKNDPK IAGILWVGYP GEAGGIAIAD VIFGRYNPSG RLPMTWYPQS 600 YVEKVPMTNM NMRPDKSNGY PGRSYRFYTG ETVYAFGDGL SYTKFSHSLV KAPRLVSLGL 660 EDNHVCRSSE CQSLEATGPH CENAVSGGGS AFEVQIKVRN GGDREGIHTV FLFTTPPAVH 720 GSPKKHLLGF EKIRLGKMEE AVVRFKVKVC KDLSVVDEIG KRKIGLGKHL LHVGDLKHSL 780 SIRI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1472 | BglX | 4.0e-56 | 94 | 477 | 393 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam01915 | Glyco_hydro_3_C | 3.0e-59 | 414 | 643 | 238 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
pfam00933 | Glyco_hydro_3 | 7.0e-65 | 78 | 369 | 322 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 1.0e-81 | 40 | 747 | 800 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 37 | 784 | 762 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAE44362.1 | 0 | 1 | 784 | 1 | 780 | alpha-L-arabinofuranosidase [Raphanus sativus] |
RefSeq | NP_196535.1 | 0 | 7 | 784 | 1 | 773 | BXL3 (beta-xylosidase 3); hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
RefSeq | NP_201262.1 | 0 | 1 | 784 | 1 | 784 | XYL4; hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase [Arabidopsis thaliana] |
RefSeq | XP_002264183.1 | 0 | 24 | 784 | 205 | 966 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002513707.1 | 0 | 38 | 784 | 35 | 777 | Beta-glucosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 128 | 747 | 91 | 696 | A Chain A, Arabidopsis Thaliana Peroxidase N |
PDB | 3u48_A | 0 | 128 | 747 | 91 | 696 | A Chain A, Arabidopsis Thaliana Peroxidase N |
PDB | 3u4a_B | 0 | 128 | 747 | 91 | 696 | A Chain A, Arabidopsis Thaliana Peroxidase N |
PDB | 3u4a_A | 0 | 128 | 747 | 91 | 696 | A Chain A, Arabidopsis Thaliana Peroxidase N |
PDB | 2x41_A | 1e-39 | 69 | 748 | 3 | 677 | A Chain A, Arabidopsis Thaliana Peroxidase N |