Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10026136m |
Family | CE8 |
Protein Properties | Length: 588 Molecular Weight: 64071.8 Isoelectric Point: 7.2972 |
Chromosome | Chromosome/Scaffold: 8 Start: 7722464 End: 7726373 |
Description | pectin methylesterase PCR fragment F |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 273 | 570 | 0 |
DITVSKDGTGTFKTITEAIKKAPEHSSRKFVIYVKAGRYEEENLKVGRKKTNIVFIGDGKGKTVITGGKSIADDLTTFHTATFAATGAGFIVRDITFENY AGPGKHQAVALRIGGDHAVVYHCSIIGYQDALYVHSNRQFFRECDIYGTVDFIFGNAAVILQSCNIYARKPMPQQKITITAQNRKDPNQNTGISIHACKI LATPDLEASKGSYPTYLGRPWKLYSRVVYMMSDMGDHIDPRGWLEWNGPFALDTLYYGEYMNKGPGSGMGQRVKWPGYHVITSAVEASKFTVAQFISG |
Full Sequence |
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Protein Sequence Length: 588 Download |
MGYDRLGPSR PSDTNQKDQA TSLPEQNKKT KTKLILFTLA VLVVGVICFG IFAGIRAAGS 60 DKTVPKLTRK PTQAISRTCS KSLYPNLCID TLLDFPGSLT ADESELIHIS FNATLQRFSK 120 ALYASSTITY TQMPPRVRSA YDSCLELLDD SVEALTRALS SVVVVSGDES HSDVMTWLSS 180 AMTNHDTCTD GFDETDGEGG GVKDQVIGAV KDLSEMVSNC LAIFAGKVTD LSGVPVVNNR 240 KLLGTEETEE LPNWLNREDR ELLGTPAPAI QADITVSKDG TGTFKTITEA IKKAPEHSSR 300 KFVIYVKAGR YEEENLKVGR KKTNIVFIGD GKGKTVITGG KSIADDLTTF HTATFAATGA 360 GFIVRDITFE NYAGPGKHQA VALRIGGDHA VVYHCSIIGY QDALYVHSNR QFFRECDIYG 420 TVDFIFGNAA VILQSCNIYA RKPMPQQKIT ITAQNRKDPN QNTGISIHAC KILATPDLEA 480 SKGSYPTYLG RPWKLYSRVV YMMSDMGDHI DPRGWLEWNG PFALDTLYYG EYMNKGPGSG 540 MGQRVKWPGY HVITSAVEAS KFTVAQFISG SSWLPPTGVA FFSGLSQ* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02314 | PLN02314 | 4.0e-153 | 41 | 585 | 559 | + pectinesterase | ||
PLN02201 | PLN02201 | 4.0e-154 | 136 | 585 | 457 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 4.0e-166 | 66 | 585 | 529 | + pectinesterase/pectinesterase inhibitor | ||
PLN02484 | PLN02484 | 0 | 1 | 587 | 589 | + probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 273 | 571 | 299 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF42038.1 | 0 | 67 | 586 | 81 | 616 | pectin methylesterase 1 [Pyrus communis] |
RefSeq | NP_200149.1 | 0 | 1 | 587 | 1 | 587 | PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F); pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002278061.1 | 0 | 57 | 586 | 61 | 596 | PREDICTED: similar to pectin methylesterase 1 [Vitis vinifera] |
RefSeq | XP_002317777.1 | 0 | 54 | 585 | 14 | 550 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321999.1 | 0 | 56 | 586 | 68 | 604 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 273 | 585 | 8 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 270 | 585 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 5e-19 | 277 | 543 | 12 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 5e-19 | 277 | 543 | 12 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 6e-19 | 277 | 520 | 12 | 284 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |