Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10026227m |
Family | GH28 |
Protein Properties | Length: 525 Molecular Weight: 57220.9 Isoelectric Point: 5.5347 |
Chromosome | Chromosome/Scaffold: 8 Start: 5814327 End: 5817078 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 148 | 498 | 0 |
ADKGGAQLFVPSGRWLTGSFNLTSHITLFLDKDAVILASQDPSDWQVVDPLPSYGQGVDLPGRRYMSLINGHMLHDVIITGDNGTIDGQGLVWWDRYNSN SLEHSRPHLIEFVSSENVFVSNLTFLNAPAYTIHSVYSRNVYIHNVTANTSPESPYTVGIVPDSSENVCIQDSTINMGYDAISLKSGWDEYGISYARPTA NVEIRNVYLGAASGSSISFGSEMSGGISDVEVSNAHIYNSLTGIAFRTTKGRGGYMKEIDISNIHMVNVGTAFLANGSFGTHPDSGFDENAFPLVSHIRL HDIVGENISIAGDFFGTKESPFTSIILSNISLSIKNSDSPADSWQCSYVDG |
Full Sequence |
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Protein Sequence Length: 525 Download |
KRKKKESFFC VFGLSVVIIT LLFSFLSFFL SLSSSSPLLS LSGSYLARKS SSLFFPLLYS 60 LFPSLTLTAF FICVLQIKMM MMPVELVLLL ALSCVILIHA TSLGNVCDQR PKKREHIMRI 120 TEFGAVGDGK TLNTLAFQNA VFSLKSYADK GGAQLFVPSG RWLTGSFNLT SHITLFLDKD 180 AVILASQDPS DWQVVDPLPS YGQGVDLPGR RYMSLINGHM LHDVIITGDN GTIDGQGLVW 240 WDRYNSNSLE HSRPHLIEFV SSENVFVSNL TFLNAPAYTI HSVYSRNVYI HNVTANTSPE 300 SPYTVGIVPD SSENVCIQDS TINMGYDAIS LKSGWDEYGI SYARPTANVE IRNVYLGAAS 360 GSSISFGSEM SGGISDVEVS NAHIYNSLTG IAFRTTKGRG GYMKEIDISN IHMVNVGTAF 420 LANGSFGTHP DSGFDENAFP LVSHIRLHDI VGENISIAGD FFGTKESPFT SIILSNISLS 480 IKNSDSPADS WQCSYVDGSS DSVVPEPCPE LKSFDSDYGR AEAL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 5.0e-16 | 110 | 416 | 316 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-16 | 118 | 470 | 359 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-17 | 223 | 452 | 233 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-17 | 120 | 416 | 307 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 3.0e-40 | 117 | 430 | 337 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM65366.1 | 0 | 146 | 521 | 2 | 375 | polygalacturonase-like protein [Arabidopsis thaliana] |
RefSeq | NP_001032043.1 | 0 | 82 | 524 | 1 | 447 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_566292.1 | 0 | 146 | 521 | 2 | 375 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_680409.1 | 0 | 96 | 524 | 17 | 449 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_850525.1 | 0 | 82 | 521 | 1 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 7e-27 | 109 | 406 | 19 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 7e-27 | 109 | 406 | 19 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 7e-27 | 109 | 406 | 19 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 7e-27 | 109 | 406 | 19 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 0.00000000000002 | 114 | 421 | 153 | 495 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |