| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10026233m |
| Family | AA7 |
| Protein Properties | Length: 518 Molecular Weight: 58638.4 Isoelectric Point: 6.2487 |
| Chromosome | Chromosome/Scaffold: 8 Start: 9198726 End: 9201708 |
| Description | cytokinin oxidase 3 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 63 | 251 | 1.5e-27 |
| VTKIFPSAVLNPSSVEDITDLVKLSYNSQSSFTLAARGHGHSHRGQASARDGVVVNMRSMVNRDRGSIKVSRTGLYADVDAGCLWIEVLNKTLELGLTPV SWTDYLYLTVGGTLSNGGFSGQTFRYGPQITNVQELDVITGKGEIATCSKDMNSDLFFAALGGLGQFGIITRARIKLDVAPKRAKWFRF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 518 Download |
| MASINFSSQF GVTTILIIIT LLTPITTYTS PQPWNILSHN DFAGKLTTAS SSIDAAATDF 60 GHVTKIFPSA VLNPSSVEDI TDLVKLSYNS QSSFTLAARG HGHSHRGQAS ARDGVVVNMR 120 SMVNRDRGSI KVSRTGLYAD VDAGCLWIEV LNKTLELGLT PVSWTDYLYL TVGGTLSNGG 180 FSGQTFRYGP QITNVQELDV ITGKGEIATC SKDMNSDLFF AALGGLGQFG IITRARIKLD 240 VAPKRAKWFR FLYIDFSEFT RDQERLISET DGVDFLEGSV MLDHGPPDNW RSTYYPPSDH 300 LRIVSMVKRH RVIYCLEVVK YYDETSQYTV NEEMEELSES LNYVKGFMYE KDVTYIDFLN 360 RVRTGELSLK SKGQWDVPHP WLNLFVPKSQ ISKFDHGVFK GIVLRNNITS GPVLVYPMNR 420 NKWDDRMSAA IPEEDVFYAV GFLRSADFDN WEAYDRENME ILKFCEDANM KAIQYLPYHS 480 SQEGWVRHFG PRWNVFVERK DKYDPKMILS PGQNIFQ* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR01678 | FAD_lactone_ox | 0.0001 | 60 | 238 | 182 | + sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1. | ||
| COG0277 | GlcD | 1.0e-22 | 68 | 515 | 465 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam01565 | FAD_binding_4 | 3.0e-28 | 68 | 211 | 145 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| pfam09265 | Cytokin-bind | 4.0e-149 | 243 | 516 | 281 | + Cytokinin dehydrogenase 1, FAD and cytokinin binding. Members of this family adopt an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. They are predominantly found in plant cytokinin dehydrogenase 1, where they are capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin. | ||
| PLN02441 | PLN02441 | 0 | 30 | 517 | 495 | + cytokinin dehydrogenase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0009690 | cytokinin metabolic process |
| GO:0016491 | oxidoreductase activity |
| GO:0019139 | cytokinin dehydrogenase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABN05760.1 | 0 | 10 | 516 | 7 | 537 | FAD linked oxidase, N-terminal [Medicago truncatula] |
| GenBank | ACM79256.1 | 0 | 6 | 516 | 11 | 523 | cytokinin oxidase/dehydrogenase [Gossypium hirsutum] |
| RefSeq | NP_200507.1 | 0 | 1 | 517 | 1 | 518 | CKX3 (CYTOKININ OXIDASE 3); amine oxidase/ cytokinin dehydrogenase [Arabidopsis thaliana] |
| RefSeq | XP_002308300.1 | 0 | 12 | 516 | 7 | 526 | cytokinin oxidase [Populus trichocarpa] |
| RefSeq | XP_002514119.1 | 0 | 41 | 516 | 42 | 528 | gulonolactone oxidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s1d_A | 0 | 23 | 517 | 5 | 516 | A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenosine |
| PDB | 1w1s_A | 0 | 23 | 517 | 23 | 534 | A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenosine |
| PDB | 1w1r_A | 0 | 23 | 517 | 23 | 534 | A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenosine |
| PDB | 1w1q_A | 0 | 23 | 517 | 23 | 534 | A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenosine |
| PDB | 1w1o_A | 0 | 23 | 517 | 23 | 534 | A Chain A, Native Cytokinin Dehydrogenase |
