Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10026324m |
Family | CBM43 |
Protein Properties | Length: 478 Molecular Weight: 52415.6 Isoelectric Point: 6.7684 |
Chromosome | Chromosome/Scaffold: 8 Start: 9692633 End: 9694716 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 362 | 443 | 1.5e-23 |
WCVMKPNVRLDDPQVAPSVSYACARGDCTSLGVGTSCSNLDGKENISYAFNSYYQINDQLDTACKFPNISEVTKTDPSTGNC | |||
GH17 | 22 | 340 | 0 |
IGANWGTQASHPLPPDIVVRMLRENGIQKVKLFDAEYDTLRALGKSGIEVMVGIPNEMLATLASSLKAAEKWVAKNVTTHISTDKVNIRYVAVGNEPFLS TYNGSYLSTTFPALRNIQIAIIRAGLQNQVKVTCPLNADVYESSTSLPSGGDFRANIRDLMITIVKFLSENGGPFTVNIYPFISLYNDANFPVDYAFFDG NSQPVSDGGTFYYNMFDANYDTLVHALEKNGFGNMPIIIGEIGWPTDGDKNANLDYAKKFNQGFMAHISGGKGTPRRPGPIDAYLFSLIDEDAKSVQPGY FERHWGIFTFDGLPKYALN |
Full Sequence |
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Protein Sequence Length: 478 Download |
MGWGSVLLLL SVAVFCQRAS SIGANWGTQA SHPLPPDIVV RMLRENGIQK VKLFDAEYDT 60 LRALGKSGIE VMVGIPNEML ATLASSLKAA EKWVAKNVTT HISTDKVNIR YVAVGNEPFL 120 STYNGSYLST TFPALRNIQI AIIRAGLQNQ VKVTCPLNAD VYESSTSLPS GGDFRANIRD 180 LMITIVKFLS ENGGPFTVNI YPFISLYNDA NFPVDYAFFD GNSQPVSDGG TFYYNMFDAN 240 YDTLVHALEK NGFGNMPIII GEIGWPTDGD KNANLDYAKK FNQGFMAHIS GGKGTPRRPG 300 PIDAYLFSLI DEDAKSVQPG YFERHWGIFT FDGLPKYALN LGTTNTGALI QAKGVRYLQR 360 KWCVMKPNVR LDDPQVAPSV SYACARGDCT SLGVGTSCSN LDGKENISYA FNSYYQINDQ 420 LDTACKFPNI SEVTKTDPST GNCRFPIMIE PYYGGASREH RFFFPLLMAA AIALSIF* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 6.0e-6 | 254 | 332 | 79 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 4.0e-13 | 361 | 427 | 74 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-28 | 361 | 445 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-77 | 22 | 340 | 321 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL24251.1 | 0 | 1 | 477 | 1 | 477 | AT5g58090/k21l19_70 [Arabidopsis thaliana] |
RefSeq | NP_200617.2 | 0 | 1 | 477 | 1 | 477 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002309034.1 | 0 | 19 | 456 | 1 | 439 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331390.1 | 0 | 9 | 458 | 1 | 451 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530371.1 | 0 | 1 | 474 | 1 | 476 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 22 | 341 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 22 | 341 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 0 | 22 | 341 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_B | 0 | 22 | 341 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_A | 0 | 22 | 341 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |