| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10026494m |
| Family | PL1 |
| Protein Properties | Length: 413 Molecular Weight: 45722.2 Isoelectric Point: 6.5927 |
| Chromosome | Chromosome/Scaffold: 8 Start: 11674919 End: 11677319 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 129 | 329 | 0 |
| LWIIFNRDMTIQLKEELIMNSFKTLDGRGASVHIAGGPCITIQYVTNIIIHGLHIHDCKQGGNTYVRDSPEHYGYRTVSDGDGVSIFGGSHVWVDHCSLS NCNDGLIDAIRGSTAITISNNYMTHHNKVMLLGHSDTYEQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFL A | |||
| Full Sequence |
|---|
| Protein Sequence Length: 413 Download |
| MLHSSSYLSF TLVFFFCYIL FSTLASSLPV SDPELVVEEV HRKINESVSR RKLGFFSCGT 60 GNPIDDCWRC DKDWEKNRKR LADCGIGFGK NAIGGRDGEI YVVTDPGNDD PVNPKPGTLR 120 YAVIRDEPLW IIFNRDMTIQ LKEELIMNSF KTLDGRGASV HIAGGPCITI QYVTNIIIHG 180 LHIHDCKQGG NTYVRDSPEH YGYRTVSDGD GVSIFGGSHV WVDHCSLSNC NDGLIDAIRG 240 STAITISNNY MTHHNKVMLL GHSDTYEQDK NMQVTIAFNH FGEGLVQRMP RCRHGYFHVV 300 NNDYTHWEMY AIGGSANPTI NSQGNRFLAP DDSDSKEVTK HEDAPESEWQ GWNWRSEGDL 360 MLNGAFFRFS GAGPTKSSSY SKASSLAARP SSHVGEITVA SGALSCKRGS LC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 4.0e-28 | 149 | 327 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 4.0e-72 | 132 | 327 | 205 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-81 | 136 | 331 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAQ84042.1 | 0 | 23 | 412 | 29 | 418 | pectate lyase [Malus x domestica] |
| DDBJ | BAB10560.1 | 0 | 4 | 412 | 3 | 410 | pectate lyase [Arabidopsis thaliana] |
| DDBJ | BAE48664.1 | 0 | 23 | 412 | 25 | 413 | Pectate lyase [Prunus mume] |
| RefSeq | NP_568967.1 | 0 | 4 | 412 | 25 | 432 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002322215.1 | 0 | 23 | 412 | 18 | 403 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 62 | 405 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 62 | 405 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 8e-20 | 131 | 328 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_B | 0.000000000000006 | 216 | 373 | 151 | 327 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_A | 0.000000000000006 | 216 | 373 | 151 | 327 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
