Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10026646m |
Family | CE8 |
Protein Properties | Length: 364 Molecular Weight: 40147.3 Isoelectric Point: 8.7024 |
Chromosome | Chromosome/Scaffold: 8 Start: 77802 End: 79384 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 62 | 353 | 0 |
ITVSLNGHAQFRSVQDAVDSIPKNNNMSIVIKIAPGLYREKVVVPATKPYITFKGAGRDVTAIEWHDRASDRGPDGQQLRTYQTASVTVYANYFSARNIS FTNTAPAPLPGMQGWQAVAFRISGDKAFFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIASRFGSIAAHGRTCPEEKTGFA FVGCRVTGTGPLYVGRAMGQYSRIVYAYTYFDALVAHGGWDDWDHKSNKSKTAFFGVYNCYGPGAAATRGVSWARALDYDSAHPFIAKSFVN |
Full Sequence |
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Protein Sequence Length: 364 Download |
MAQLTNNSFN CLFSISLSLL LLFHCLCFRF SLVAACSNST EDQQIQHHHH RKWVGPSGHK 60 VITVSLNGHA QFRSVQDAVD SIPKNNNMSI VIKIAPGLYR EKVVVPATKP YITFKGAGRD 120 VTAIEWHDRA SDRGPDGQQL RTYQTASVTV YANYFSARNI SFTNTAPAPL PGMQGWQAVA 180 FRISGDKAFF SGCGFYGAQD TLCDDAGRHY FKECYIEGSI DFIFGNGRSM YKDCELHSIA 240 SRFGSIAAHG RTCPEEKTGF AFVGCRVTGT GPLYVGRAMG QYSRIVYAYT YFDALVAHGG 300 WDDWDHKSNK SKTAFFGVYN CYGPGAAATR GVSWARALDY DSAHPFIAKS FVNGRHWIAP 360 RDA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 3.0e-104 | 60 | 360 | 303 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 7.0e-105 | 47 | 363 | 346 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 6.0e-114 | 57 | 358 | 304 | + pectinesterase | ||
PLN02682 | PLN02682 | 4.0e-133 | 37 | 360 | 338 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 0 | 33 | 363 | 331 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD64977.1 | 0 | 1 | 363 | 1 | 360 | pectinesterase family protein [Brassica oleracea] |
GenBank | ABD65006.1 | 0 | 27 | 363 | 11 | 344 | pectinesterase family protein [Brassica oleracea] |
DDBJ | BAB09076.1 | 0 | 1 | 363 | 1 | 359 | pectin methylesterase-like [Arabidopsis thaliana] |
EMBL | CBI31927.1 | 0 | 9 | 363 | 4 | 349 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_199561.1 | 0 | 1 | 363 | 1 | 362 | pectinesterase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1.00053e-42 | 54 | 358 | 5 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-33 | 64 | 358 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 6e-20 | 59 | 340 | 5 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 6e-20 | 59 | 340 | 5 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 3uw0_A | 1e-19 | 59 | 331 | 32 | 340 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |