Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10026738m |
Family | CE8 |
Protein Properties | Length: 339 Molecular Weight: 37238.3 Isoelectric Point: 8.9468 |
Chromosome | Chromosome/Scaffold: 8 Start: 11071155 End: 11072903 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 44 | 327 | 0 |
NVKQNGRGHFKTITEAIKSVGEGNTRRVIIKVGPGVYKEKVTIDRSKPFITLYGHPNAMPVLTYDGTAAQYGTVDSATLIVLSDYFMAVNIIVKNSAPMP DGKKKGAQALSMRISGNKAAFYNCKFYGYQDTVCDDTGNHFFKDCYIEGTFDFIFGSGRSLYLGTQLNVVGDGIRVIAAQAGKSAEEKSGYSFVHCKVTG TGTGIYLGRAWMSHPKVVYAYTDMSSVVNPSGWQENRETERDKTVFYGEYKCSGPGSHKEKRVKYTQDIDDIEANYFISLGYIQ |
Full Sequence |
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Protein Sequence Length: 339 Download |
MGYNSVSLIV TILLVVITSP VVFGNDAAPI PQNKGRIEQW FNTNVKQNGR GHFKTITEAI 60 KSVGEGNTRR VIIKVGPGVY KEKVTIDRSK PFITLYGHPN AMPVLTYDGT AAQYGTVDSA 120 TLIVLSDYFM AVNIIVKNSA PMPDGKKKGA QALSMRISGN KAAFYNCKFY GYQDTVCDDT 180 GNHFFKDCYI EGTFDFIFGS GRSLYLGTQL NVVGDGIRVI AAQAGKSAEE KSGYSFVHCK 240 VTGTGTGIYL GRAWMSHPKV VYAYTDMSSV VNPSGWQENR ETERDKTVFY GEYKCSGPGS 300 HKEKRVKYTQ DIDDIEANYF ISLGYIQGSS WLLPPPSF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 6.0e-84 | 45 | 334 | 298 | + probable pectinesterase | ||
PLN02304 | PLN02304 | 3.0e-86 | 45 | 334 | 299 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 2.0e-86 | 45 | 332 | 288 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-102 | 46 | 334 | 296 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 23 | 338 | 343 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAG52566.1 | 0 | 21 | 338 | 1 | 338 | AC010675_14 putative pectin methylesterase; 8433-9798 [Arabidopsis thaliana] |
DDBJ | BAB09012.1 | 0 | 1 | 338 | 1 | 364 | pectin methylesterase-like protein [Arabidopsis thaliana] |
RefSeq | NP_177152.2 | 0 | 1 | 338 | 1 | 361 | PPME1; pectinesterase [Arabidopsis thaliana] |
RefSeq | NP_200976.1 | 0 | 1 | 338 | 1 | 338 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_568181.1 | 0 | 1 | 338 | 1 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 2e-34 | 42 | 332 | 4 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 2e-33 | 42 | 332 | 8 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 3uw0_A | 1e-18 | 52 | 318 | 43 | 329 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 6e-17 | 53 | 210 | 18 | 190 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 6e-17 | 53 | 210 | 18 | 190 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |