Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10027711m |
Family | GH28 |
Protein Properties | Length: 396 Molecular Weight: 42476.8 Isoelectric Point: 8.892 |
Chromosome | Chromosome/Scaffold: 8 Start: 5139971 End: 5141463 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 46 | 376 | 0 |
EACQFPTKSTVLIPKGEYKLGEIEMLGPCKAPIRIALQGTLKADGNAVHNQKWVAFRNINGFKLNGGGVFDGEGNAAWRVNNCHKTEQCKKLPISIRFDY ITDGKVRGITSLDAKNFHINVIGAKNLTFEEVRIIAPAESPNTDGIHVGRSDGIKIINSVITTGDDCVSVGDGMKNLLVERVTCGPGHGISVGSLGRYGH EQDVKGIKIINCTLQETDNGIRIKTWPSAACSTSASDIHFENIVLKNVTNPILIDQEYCPWNHCNKAKPSTIKLSNISFKNIRGTSGNKDAVKLLCSKGF PCQNVELGNIDIKYTGADGPATFQCANVSPK |
Full Sequence |
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Protein Sequence Length: 396 Download |
MGRVNFGVSA FFVFCLLGLS ANAKVFNIGS PPGSDITKAL LKTFNEACQF PTKSTVLIPK 60 GEYKLGEIEM LGPCKAPIRI ALQGTLKADG NAVHNQKWVA FRNINGFKLN GGGVFDGEGN 120 AAWRVNNCHK TEQCKKLPIS IRFDYITDGK VRGITSLDAK NFHINVIGAK NLTFEEVRII 180 APAESPNTDG IHVGRSDGIK IINSVITTGD DCVSVGDGMK NLLVERVTCG PGHGISVGSL 240 GRYGHEQDVK GIKIINCTLQ ETDNGIRIKT WPSAACSTSA SDIHFENIVL KNVTNPILID 300 QEYCPWNHCN KAKPSTIKLS NISFKNIRGT SGNKDAVKLL CSKGFPCQNV ELGNIDIKYT 360 GADGPATFQC ANVSPKIMGT QVPKACSSPV TKPPQ* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-74 | 34 | 384 | 359 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 9.0e-76 | 34 | 388 | 362 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 6.0e-78 | 11 | 386 | 386 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-120 | 48 | 373 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 5.0e-123 | 34 | 386 | 356 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABG38467.1 | 0 | 4 | 394 | 3 | 395 | pollen-expressed protein MF6t [Brassica juncea] |
GenBank | ACP74159.1 | 0 | 4 | 394 | 3 | 395 | putative polygalacturonase [Brassica rapa subsp. campestris] |
EMBL | CAA05892.1 | 0 | 6 | 389 | 5 | 389 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_187439.1 | 0 | 6 | 389 | 5 | 389 | polygalacturonase 3 (PGA3) / pectinase [Arabidopsis thaliana] |
RefSeq | NP_199625.1 | 0 | 1 | 395 | 1 | 395 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 0.000000000000003 | 112 | 373 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000003 | 112 | 373 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000003 | 112 | 373 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000003 | 112 | 373 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 0.000000000000003 | 112 | 373 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |