| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10027769m |
| Family | AA3 |
| Protein Properties | Length: 588 Molecular Weight: 64483.6 Isoelectric Point: 7.0686 |
| Chromosome | Chromosome/Scaffold: 8 Start: 7106484 End: 7108885 |
| Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA3 | 39 | 580 | 0 |
| VAPMFARFDYIIIGGGTSGCALAATLSQNASVLVLERGGAPYDDPTATDIGSFATTLSNTSPKSWSQLFVSEDGVYNTRARVLGGGSVLNAGFYTRAGEE YVKETEWKSDEVEAAYEWVENKVAFEPPMMGWQTALRDGLLEAGEYPYNGFTYDHNYGTKVGGTIFDRAGHRHTAADLLEYANPNTIVVYLHASVHKILF TTKGRPRPKAYGVIFQDANGVLHKAELEKNAMNEVILSAGAIGSPQLLMLSGIGPAAHLAAHGIKPVVLDHPMVGQGMGDNPMNAIYIPSPTPVEVSLIQ VVGITKFDSYIEGASGVIFSYSWTRKFFDGVLNYLNEIQTSRTASATSPTWSTQSITKFFNSIDPLLNATTRAGLILQKIAGPVSRGHLELRNTNPDDNP LVRFNYYQEPEDLKKCVDGINTIIKVIKSKAFSKFKYPDATIQGLLDLILSVPTNLRPKHITSVFNLQQFCIDTVMTIWHYHGGCQVGRVVDKNYKVLGL DSLRVIDGSTFLKSPGTNPQATVMMLGRYMGQKILQERAAYH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 588 Download |
| MGLQILWLGR IVLVVTFISH SLCFPDQAGY YSFMKDATVA PMFARFDYII IGGGTSGCAL 60 AATLSQNASV LVLERGGAPY DDPTATDIGS FATTLSNTSP KSWSQLFVSE DGVYNTRARV 120 LGGGSVLNAG FYTRAGEEYV KETEWKSDEV EAAYEWVENK VAFEPPMMGW QTALRDGLLE 180 AGEYPYNGFT YDHNYGTKVG GTIFDRAGHR HTAADLLEYA NPNTIVVYLH ASVHKILFTT 240 KGRPRPKAYG VIFQDANGVL HKAELEKNAM NEVILSAGAI GSPQLLMLSG IGPAAHLAAH 300 GIKPVVLDHP MVGQGMGDNP MNAIYIPSPT PVEVSLIQVV GITKFDSYIE GASGVIFSYS 360 WTRKFFDGVL NYLNEIQTSR TASATSPTWS TQSITKFFNS IDPLLNATTR AGLILQKIAG 420 PVSRGHLELR NTNPDDNPLV RFNYYQEPED LKKCVDGINT IIKVIKSKAF SKFKYPDATI 480 QGLLDLILSV PTNLRPKHIT SVFNLQQFCI DTVMTIWHYH GGCQVGRVVD KNYKVLGLDS 540 LRVIDGSTFL KSPGTNPQAT VMMLGRYMGQ KILQERAAYH KKIEEDS* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK02106 | PRK02106 | 3.0e-12 | 421 | 573 | 157 | + choline dehydrogenase; Validated | ||
| TIGR03970 | Rv0697 | 7.0e-26 | 47 | 320 | 318 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
| PRK02106 | PRK02106 | 4.0e-33 | 45 | 318 | 331 | + choline dehydrogenase; Validated | ||
| COG2303 | BetA | 3.0e-46 | 40 | 578 | 589 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| PLN02785 | PLN02785 | 0 | 46 | 576 | 533 | + Protein HOTHEAD | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB11043.1 | 0 | 1 | 566 | 1 | 563 | mandelonitrile lyase-like protein [Arabidopsis thaliana] |
| EMBL | CAB87405.1 | 0 | 1 | 566 | 1 | 557 | ADHESION OF CALYX EDGES-like protein [Arabidopsis thaliana] |
| RefSeq | NP_001119417.1 | 0 | 34 | 585 | 1 | 552 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
| RefSeq | NP_200008.1 | 0 | 1 | 585 | 1 | 585 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
| RefSeq | NP_567032.1 | 0 | 1 | 585 | 1 | 576 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ju2_B | 0 | 30 | 583 | 11 | 524 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 1ju2_A | 0 | 30 | 583 | 11 | 524 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdp_B | 0 | 30 | 578 | 11 | 519 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdp_A | 0 | 30 | 578 | 11 | 519 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdn_B | 0 | 30 | 578 | 11 | 519 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
