Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10027803m |
Family | CBM43 |
Protein Properties | Length: 486 Molecular Weight: 53759.5 Isoelectric Point: 6.0184 |
Chromosome | Chromosome/Scaffold: 8 Start: 12278560 End: 12280433 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 369 | 449 | 8.1e-24 |
WCVVNNDTVNLDEIGPDLDYACYHGDCTAMEAGSTCSKLTKIQNISYAFNMYFQIQDQDVRACDFKGAAMISKVNASVGSC | |||
GH17 | 29 | 347 | 0 |
GVNWGSIASHPLNPNIVVQMLKDNKINKVKLFDADSWTMNALAGSGMEVMVGIPNNLLESLADDYDNAKDWVKENVTHYMRKGGVDIKYVAVGNEPFLSA YNGSFLKTTFPALKNIHKALKEAGHTDKIKATIPQNAEVYQSANDKPSEGDFRKDVKQTMVDIVTYFHDNDLPFTVNIYPFLSLYLNEHFPVEFAFLDGD GQTINDKGKNYDNVFDANYDTLVFALKKAGIHDMKIIVGEVGWPTDGHKYATPKLAEKFYAGLMKRLAKDGGTPSRPERLEVYLFGFLDEDMKSILPGPF ERHWGIFRYDGTPKFVLDF |
Full Sequence |
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Protein Sequence Length: 486 Download |
MAGRAAMLVN VGTVTMTVLT LATLVGGFGV NWGSIASHPL NPNIVVQMLK DNKINKVKLF 60 DADSWTMNAL AGSGMEVMVG IPNNLLESLA DDYDNAKDWV KENVTHYMRK GGVDIKYVAV 120 GNEPFLSAYN GSFLKTTFPA LKNIHKALKE AGHTDKIKAT IPQNAEVYQS ANDKPSEGDF 180 RKDVKQTMVD IVTYFHDNDL PFTVNIYPFL SLYLNEHFPV EFAFLDGDGQ TINDKGKNYD 240 NVFDANYDTL VFALKKAGIH DMKIIVGEVG WPTDGHKYAT PKLAEKFYAG LMKRLAKDGG 300 TPSRPERLEV YLFGFLDEDM KSILPGPFER HWGIFRYDGT PKFVLDFTGQ GRKMVPVAAK 360 GVQYLEKQWC VVNNDTVNLD EIGPDLDYAC YHGDCTAMEA GSTCSKLTKI QNISYAFNMY 420 FQIQDQDVRA CDFKGAAMIS KVNASVGSCL FPVQIISGSD DVRINSVFGR FILFGFVLFG 480 LVAAI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.0003 | 264 | 338 | 79 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 1.0e-18 | 368 | 438 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 7.0e-31 | 368 | 451 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 4.0e-67 | 31 | 347 | 319 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN62816.1 | 0 | 14 | 462 | 12 | 461 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_201284.1 | 0 | 1 | 465 | 1 | 465 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002275701.1 | 0 | 14 | 462 | 12 | 461 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002310612.1 | 0 | 11 | 478 | 15 | 479 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530257.1 | 0 | 14 | 460 | 15 | 460 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 0 | 29 | 348 | 4 | 315 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
PDB | 3ur8_A | 0 | 29 | 348 | 4 | 315 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
PDB | 3ur7_B | 0 | 29 | 348 | 4 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 29 | 348 | 4 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 4gzj_A | 0 | 29 | 348 | 4 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |